* installing *source* package 'netdiffuseR' ...
** this is package 'netdiffuseR' version '1.23.0'
** package 'netdiffuseR' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_09_02_09_03_13_2588/RtmpsJsao7/R.INSTALL29254453d6d0d/netdiffuseR/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c adjmat.cpp -o adjmat.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from adjmat.cpp:14:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infection.cpp -o infection.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from infection.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c netdiffuser_extra.cpp -o netdiffuser_extra.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from netdiffuser_extra.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c plot.cpp -o plot.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from plot.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
plot.cpp: In function 'Rcpp::NumericMatrix edges_coords(const arma::sp_mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, const arma::colvec&, bool, bool, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::LogicalVector)':
plot.cpp:222:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
222 | if (n != y.n_rows) stop("-x- and -y- lengths do not coincide.");
| ~~^~~~~~~~~~~
plot.cpp:223:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
223 | if (n != toa.n_rows) stop("-x- and -toa- lengths do not coincide.");
| ~~^~~~~~~~~~~~~
plot.cpp:224:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
224 | if (n != vertex_cex.n_rows) stop("-x- and -vertex_cex- lengths do not coincide.");
| ~~^~~~~~~~~~~~~~~~~~~~
plot.cpp:226:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const long long unsigned int'} and 'int' [-Wsign-compare]
226 | if (graph.n_rows != n) stop("-graph- does not have the same number of rows as -x-, -y-, and -toa-.");
| ~~~~~~~~~~~~~^~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rgraph.cpp -o rgraph.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from rgraph.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stats.cpp -o stats.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from stats.cpp:20:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c struct_test.cpp -o struct_test.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from struct_test.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o netdiffuseR.dll tmp.def RcppExports.o adjmat.o infection.o netdiffuser_extra.o plot.o rgraph.o stats.o struct_test.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_02_09_03_13_2588/RtmpsJsao7/R.INSTALL29254453d6d0d/netdiffuseR/src'
make[1]: Entering directory '/d/temp/2025_09_02_09_03_13_2588/RtmpsJsao7/R.INSTALL29254453d6d0d/netdiffuseR/src'
make[1]: Leaving directory '/d/temp/2025_09_02_09_03_13_2588/RtmpsJsao7/R.INSTALL29254453d6d0d/netdiffuseR/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-netdiffuseR/00new/netdiffuseR/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'netdiffuseR' as netdiffuseR_1.23.0.zip
* DONE (netdiffuseR)