* installing *source* package 'netdiffuseR' ...
** this is package 'netdiffuseR' version '1.23.0'
** package 'netdiffuseR' successfully unpacked and MD5 sums checked
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_09_24_01_50_00_30071/Rtmp25NMtI/R.INSTALL2c3a01b01da4/netdiffuseR/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c adjmat.cpp -o adjmat.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from adjmat.cpp:14:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c infection.cpp -o infection.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from infection.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
infection.cpp: In function 'Rcpp::NumericVector infection_cpp(Rcpp::List, const arma::colvec&, bool, int, double, bool, int, bool, bool)':
infection.cpp:58:25: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   58 |     if (!arma::is_finite(times(i))) {
      |          ~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
infection.cpp: In function 'Rcpp::NumericVector susceptibility_cpp(Rcpp::List, const arma::colvec&, bool, int, double, bool, int, bool, bool)':
infection.cpp:162:25: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  162 |     if (!arma::is_finite(times(i))) {
      |          ~~~~~~~~~~~~~~~^~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c netdiffuser_extra.cpp -o netdiffuser_extra.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from netdiffuser_extra.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c plot.cpp -o plot.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from plot.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
plot.cpp: In function 'Rcpp::NumericMatrix edges_coords(const arma::sp_mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, const arma::colvec&, bool, bool, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::LogicalVector)':
plot.cpp:222:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  222 |   if (n != y.n_rows) stop("-x- and -y- lengths do not coincide.");
      |       ~~^~~~~~~~~~~
plot.cpp:223:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  223 |   if (n != toa.n_rows) stop("-x- and -toa- lengths do not coincide.");
      |       ~~^~~~~~~~~~~~~
plot.cpp:224:9: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  224 |   if (n != vertex_cex.n_rows) stop("-x- and -vertex_cex- lengths do not coincide.");
      |       ~~^~~~~~~~~~~~~~~~~~~~
plot.cpp:226:20: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const long long unsigned int'} and 'int' [-Wsign-compare]
  226 |   if (graph.n_rows != n) stop("-graph- does not have the same number of rows as -x-, -y-, and -toa-.");
      |       ~~~~~~~~~~~~~^~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c rgraph.cpp -o rgraph.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from rgraph.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c stats.cpp -o stats.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from stats.cpp:20:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD -DSTRICT_R_HEADERS   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c struct_test.cpp -o struct_test.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from struct_test.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17 -shared -s -static-libgcc -o netdiffuseR.dll tmp.def RcppExports.o adjmat.o infection.o netdiffuser_extra.o plot.o rgraph.o stats.o struct_test.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_24_01_50_00_30071/Rtmp25NMtI/R.INSTALL2c3a01b01da4/netdiffuseR/src'
make[1]: Entering directory '/d/temp/2025_09_24_01_50_00_30071/Rtmp25NMtI/R.INSTALL2c3a01b01da4/netdiffuseR/src'
make[1]: Leaving directory '/d/temp/2025_09_24_01_50_00_30071/Rtmp25NMtI/R.INSTALL2c3a01b01da4/netdiffuseR/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-netdiffuseR/00new/netdiffuseR/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'netdiffuseR' as netdiffuseR_1.23.0.zip
* DONE (netdiffuseR)