* installing *source* package 'matrixCorr' ...
** this is package 'matrixCorr' version '0.5.1'
** package 'matrixCorr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/Rtmp4UPIne/R.INSTALLdc8015071208/matrixCorr/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c biweight_mid_corr.cpp -o biweight_mid_corr.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from biweight_mid_corr.cpp:5:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from biweight_mid_corr.cpp:14:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bland_altman.cpp -o bland_altman.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from bland_altman.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from bland_altman.cpp:9:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bland_altman_repeated.cpp -o bland_altman_repeated.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from bland_altman_repeated.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from bland_altman_repeated.cpp:13:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated.cpp -o ccc_repeated.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from ccc_repeated.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated_helper.cpp -o ccc_repeated_helper.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from ccc_repeated_helper.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ccc_repeated_mixed_model.cpp -o ccc_repeated_mixed_model.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from ccc_repeated_mixed_model.cpp:3:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from ccc_repeated_mixed_model.cpp:17:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
ccc_repeated_mixed_model.cpp: In function 'Rcpp::List ccc_vc_cpp(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int, double, double, int, Rcpp::Nullable<Rcpp::Matrix<14> >, Rcpp::Nullable<Rcpp::Matrix<14> >, Rcpp::Nullable<Rcpp::Matrix<14> >, bool, double, bool, bool, double, bool, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >)':
ccc_repeated_mixed_model.cpp:947:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
947 | for (size_t k = 0; k < tim_i.size(); ++k)
| ^~~
ccc_repeated_mixed_model.cpp:950:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
950 | auto kp = unit_kappas(times_obs);
| ^~~~
ccc_repeated_mixed_model.cpp:959:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
959 | for (size_t k = 0; k < tim_i.size(); ++k)
| ^~~
ccc_repeated_mixed_model.cpp:962:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
962 | auto kp = unit_kappas(times_obs);
| ^~~~
ccc_repeated_mixed_model.cpp:1263:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1263 | for (int k = 0; k < n_i; ++k)
| ^~~
ccc_repeated_mixed_model.cpp:1265:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1265 | if ((int)idx.size() <= 1) continue;
| ^~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c concordance_corr.cpp -o concordance_corr.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from concordance_corr.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from concordance_corr.cpp:4:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
concordance_corr.cpp: In function 'arma::mat ccc_cpp(const arma::mat&)':
concordance_corr.cpp:23:13: warning: unused variable 'n' [-Wunused-variable]
23 | const int n = X.n_rows;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distance_correlation.cpp -o distance_correlation.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from distance_correlation.cpp:5:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kendall_corr.cpp -o kendall_corr.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from kendall_corr.cpp:3:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from kendall_corr.cpp:8:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c partial_correlation.cpp -o partial_correlation.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from partial_correlation.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from partial_correlation.cpp:8:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pearson.cpp -o pearson.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from pearson.cpp:3:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c schafer_strimmer_shrinkage_correlation.cpp -o schafer_strimmer_shrinkage_correlation.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from schafer_strimmer_shrinkage_correlation.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spearman.cpp -o spearman.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from spearman.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from spearman.cpp:4:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tetrachoric.cpp -o tetrachoric.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from tetrachoric.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
In file included from tetrachoric.cpp:10:
matrixCorr_detail.h: In function 'void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)':
matrixCorr_detail.h:1175:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1175 | for (int k = 0; k < (int)tim_ord.size(); ++k)
| ^~~
matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
1179 | int s = 0;
| ^~~
tetrachoric.cpp: In function 'void build_cutpoints(const Rcpp::NumericMatrix&, std::vector<double>&, std::vector<double>&)':
tetrachoric.cpp:64:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
64 | for (int i=0;i<R;++i)
| ^~~
tetrachoric.cpp:70:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
70 | if (tot <= 0) stop("Empty table");
| ^~
tetrachoric.cpp: In function 'double matrixCorr_polychoric_mle_cpp(Rcpp::NumericMatrix, double)':
tetrachoric.cpp:177:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
177 | for (int j=0;j<C;++j)
| ^~~
tetrachoric.cpp:180:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
180 | std::vector<double> alpha, beta;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/cpp11/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c validate_corr_input.cpp -o validate_corr_input.o
g++ -std=gnu++17 -shared -s -static-libgcc -o matrixCorr.dll tmp.def RcppExports.o biweight_mid_corr.o bland_altman.o bland_altman_repeated.o ccc_repeated.o ccc_repeated_helper.o ccc_repeated_mixed_model.o concordance_corr.o distance_correlation.o kendall_corr.o partial_correlation.o pearson.o schafer_strimmer_shrinkage_correlation.o spearman.o tetrachoric.o validate_corr_input.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/Rtmp4UPIne/R.INSTALLdc8015071208/matrixCorr/src'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/Rtmp4UPIne/R.INSTALLdc8015071208/matrixCorr/src'
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/Rtmp4UPIne/R.INSTALLdc8015071208/matrixCorr/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-matrixCorr/00new/matrixCorr/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'matrixCorr' as matrixCorr_0.5.1.zip
* DONE (matrixCorr)