* installing *source* package 'mashr' ...
** package 'mashr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpQ38i9B/R.INSTALL13cdc19763855/mashr/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -I/include -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -I/include -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extreme_deconvolution.cpp -o extreme_deconvolution.o
extreme_deconvolution.cpp: In function '_Z12proj_EM_stepP9datapointiP8gaussianiPbS3_S3_Pdbdbbb._omp_fn.0':
extreme_deconvolution.cpp:728:47: warning: 'Rtrans' may be used uninitialized [-Wmaybe-uninitialized]
  728 |                                 gsl_blas_dsymm(CblasLeft, CblasUpper, 1.0, thisgaussian->VV, Rtrans, 0.0, VRT);// Only the upper right part of VV is calculated --> use only that part
      |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
extreme_deconvolution.cpp:47:14: note: 'Rtrans' was declared here
   47 | gsl_matrix * Rtrans       = NULL;
      |              ^~~~~~
extreme_deconvolution.cpp:729:47: warning: 'VRT' may be used uninitialized [-Wmaybe-uninitialized]
  729 |                                 gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, thisdata->RR, VRT, 1.0, Tij);
      |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
extreme_deconvolution.cpp:45:14: note: 'VRT' was declared here
   45 | gsl_matrix * VRT          = NULL;
      |              ^~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -I/include -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mash.cpp -o mash.o
g++ -std=gnu++17 -shared -s -static-libgcc -o mashr.dll tmp.def RcppExports.o extreme_deconvolution.o mash.o -fopenmp -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -L/lib -lgsl -lgslcblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpQ38i9B/R.INSTALL13cdc19763855/mashr/src'
make[1]: Entering directory '/d/temp/RtmpQ38i9B/R.INSTALL13cdc19763855/mashr/src'
make[1]: Leaving directory '/d/temp/RtmpQ38i9B/R.INSTALL13cdc19763855/mashr/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-mashr/00new/mashr/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mashr' as mashr_0.2.79.zip
* DONE (mashr)