- using R version 4.4.2 (2024-10-31 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'lcmm/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'lcmm' version '2.1.0'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'lcmm' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 13.3.0'
- used Fortran compiler: 'GNU Fortran (GCC) 13.3.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [81s] OK
- checking Rd files ... [2s] NOTE
checkRd: (-1) Jointlcmm.Rd:377: Lost braces; missing escapes or markup?
377 | logscale=TRUE where {M_j} is the basis of cubic M-splines.
| ^
checkRd: (-1) externVar.Rd:123: Lost braces
123 | code{cor=BM(time)}. By default, no autocorrelated Gaussian process is added.}
| ^
checkRd: (-1) hlme.Rd:154: Lost braces
154 | item{best}{vector of parameter estimates in the same order as
| ^
checkRd: (-1) hlme.Rd:154-155: Lost braces
154 | item{best}{vector of parameter estimates in the same order as
| ^
checkRd: (-1) lcmm.Rd:269: Lost braces; missing escapes or markup?
269 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)),
| ^
checkRd: (-1) lcmm.Rd:269: Lost braces; missing escapes or markup?
269 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)),
| ^
checkRd: (-1) lcmm.Rd:270: Lost braces; missing escapes or markup?
270 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the
| ^
checkRd: (-1) lcmm.Rd:276: Lost braces; missing escapes or markup?
276 | transformation: Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and
| ^
checkRd: (-1) lcmm.Rd:277: Lost braces; missing escapes or markup?
277 | b_{C+1}=+infinity. The number of parameters is reduced if some levels do not
| ^
checkRd: (-1) lcmm.Rd:279: Lost braces; missing escapes or markup?
279 | dataset, the corresponding threshold b_{c+1} is constrained to be the same
| ^
checkRd: (-1) lcmm.Rd:280: Lost braces; missing escapes or markup?
280 | as the previous one b_{c}. The number of parameters in the link function is
| ^
checkRd: (-1) lcmm.Rd:285: Lost braces; missing escapes or markup?
285 | b_{k}=b_{k-1}+(b_k^*)^2.
| ^
checkRd: (-1) lcmm.Rd:285: Lost braces; missing escapes or markup?
285 | b_{k}=b_{k-1}+(b_k^*)^2.
| ^
checkRd: (-1) multlcmm.Rd:322: Lost braces; missing escapes or markup?
322 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)),
| ^
checkRd: (-1) multlcmm.Rd:322: Lost braces; missing escapes or markup?
322 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)),
| ^
checkRd: (-1) multlcmm.Rd:323: Lost braces; missing escapes or markup?
323 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the
| ^
checkRd: (-1) multlcmm.Rd:330: Lost braces; missing escapes or markup?
330 | Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and b_{C+1}=+infinity.
| ^
checkRd: (-1) multlcmm.Rd:330: Lost braces; missing escapes or markup?
330 | Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and b_{C+1}=+infinity.
| ^
checkRd: (-1) multlcmm.Rd:333: Lost braces; missing escapes or markup?
333 | b_{k}=b_{k-1}+(b_k^*)^2.
| ^
checkRd: (-1) multlcmm.Rd:333: Lost braces; missing escapes or markup?
333 | b_{k}=b_{k-1}+(b_k^*)^2.
| ^
checkRd: (-1) print.lcmm.Rd:20: Lost braces
20 | for fitted latent class mixed-effects, or class \code{Jointlcmm}, code{mpjclmm} for
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [18s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s] OK
- checking PDF version of manual ... [25s] OK
- checking HTML version of manual ... [13s] OK
- DONE
Status: 1 NOTE