• using R version 4.6.1 (2026-06-24 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-08-07 13:24:19 UTC
• checking for file 'kmeRtone/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'kmeRtone' version '1.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'kmeRtone' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 14.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s] OK
• checking whether the package can be loaded with stated dependencies ... [4s] OK
• checking whether the package can be unloaded cleanly ... [4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s] OK
• checking loading without being on the library search path ... [4s] OK
• checking whether startup messages can be suppressed ... [4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ... [6s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [29s] ERROR   Running 'testthat.R' [29s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(kmeRtone)   >   > testthat::test_check("kmeRtone")      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%            ------------------------------------------------------------                    Extraction of Case K-mers   ------------------------------------------------------------   Extracting 2-mers from chr20............Saving _problems/test_score-40.R   [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_score.R:25:1'): (code run outside of `test_that()`) ────────────   Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/'   Backtrace:        ▆     1. └─kmeRtone::kmeRtone(...) at test_score.R:25:1     2. └─kmeRtone::SCORE(...)     3. └─kmeRtone::extractKmers(...)     4. └─future.apply::future_lapply(...)     5. └─future.apply:::future_xapply(...)     6. └─base::tryCatch(...)     7. └─base (local) tryCatchList(expr, classes, parentenv, handlers)     8. └─base (local) tryCatchOne(...)     9. └─value[[3L]](cond)    10. └─future.apply:::onError(e, futures = fs, debug = debug)      [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [22s] OK
• checking HTML version of manual ... [19s] OK
• DONE

Status: 1 ERROR