* installing *source* package 'jrSiCKLSNMF' ...
** this is package 'jrSiCKLSNMF' version '1.2.3'
** package 'jrSiCKLSNMF' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_09_29_01_50_00_31777/RtmpIRUOLb/R.INSTALL6d343f46274b/jrSiCKLSNMF/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c jrSiCKLSNMF.cpp -o jrSiCKLSNMF.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
                 from jrSiCKLSNMF.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:860:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp: In instantiation of 'static typename T1::elem_type arma::spop_accu::apply(const arma::SpBase<typename T1::elem_type, T1>&) [with T1 = arma::mtSpReduceOp<double, arma::SpMat<double>, arma::op_sp_diagvec>; typename T1::elem_type = double; typename T1::elem_type = double]':
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_accu.hpp:64:26:   required from 'auto arma::accu(const T1&, const typename enable_if<is_arma_sparse_type<T1>::value>::result*) [with T1 = mtSpReduceOp<double, SpMat<double>, op_sp_diagvec>; typename enable_if<is_arma_sparse_type<T1>::value>::result = int]'
   64 |   return spop_accu::apply(expr);
      |          ~~~~~~~~~~~~~~~~^~~~~~
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_sum.hpp:106:14:   required from 'typename arma::enable_if2<(arma::is_arma_sparse_type<T1>::value && arma::resolves_to_sparse_vector<T1>::yes), typename T1::elem_type>::result arma::sum(const T1&) [with T1 = mtSpReduceOp<double, SpMat<double>, op_sp_diagvec>; typename enable_if2<(is_arma_sparse_type<T1>::value && resolves_to_sparse_vector<T1>::yes), typename T1::elem_type>::result = double; typename T1::elem_type = double]'
  106 |   return accu(x);
      |          ~~~~^~~
jrSiCKLSNMF.cpp:307:13:   required from here
  307 |      if((sum(diagvec(DF[i]))==0)&&(lambdaWV[i]>0)){
      |          ~~~^~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp:47:74: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   47 |     const SpSubview<eT>& sv = reinterpret_cast< const SpSubview<eT>& >(P.Q);
      |                                                                        ~~^
g++ -std=gnu++17 -shared -s -static-libgcc -o jrSiCKLSNMF.dll tmp.def RcppExports.o jrSiCKLSNMF.o -fopenmp -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_29_01_50_00_31777/RtmpIRUOLb/R.INSTALL6d343f46274b/jrSiCKLSNMF/src'
make[1]: Entering directory '/d/temp/2025_09_29_01_50_00_31777/RtmpIRUOLb/R.INSTALL6d343f46274b/jrSiCKLSNMF/src'
make[1]: Leaving directory '/d/temp/2025_09_29_01_50_00_31777/RtmpIRUOLb/R.INSTALL6d343f46274b/jrSiCKLSNMF/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-jrSiCKLSNMF/00new/jrSiCKLSNMF/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'jrSiCKLSNMF' as jrSiCKLSNMF_1.2.3.zip
* DONE (jrSiCKLSNMF)