• using R version 4.6.1 (2026-06-24 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-07-18 16:15:17 UTC
• checking for file 'jointCompRisk/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'jointCompRisk' version '0.1.1'
• package encoding: UTF-8
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• checking whether package 'jointCompRisk' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
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• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
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• checking R code for possible problems ... [7s] OK
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• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [3s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [4s] ERROR   Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(jointCompRisk)   >   > test_check("jointCompRisk")   Saving _problems/test-basic-32.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-basic.R:32:3'): do_cif_analysis returns formatted summaries ────   Error in `survfit.formula(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)`: the etype argument is no longer supported, use a factor as the status variable   Backtrace:       ▆    1. └─jointCompRisk::do_cif_analysis(prepped, tau = 15) at test-basic.R:32:3    2. └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)    3. └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)    4. ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)    5. └─survival::survfit.formula(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s] ERROR Error(s) in re-building vignettes: --- re-building 'Example_analysis.Rmd' using rmarkdown Quitting from Example_analysis.Rmd:24-42 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `survfit.formula()`: ! the etype argument is no longer supported, use a factor as the status variable --- Backtrace:     ▆  1. └─jointCompRisk::do_cif_analysis(mydata_std, tau = 15)  2. └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)  3. └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)  4. ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)  5. └─survival::survfit.formula(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Example_analysis.Rmd' failed with diagnostics: the etype argument is no longer supported, use a factor as the status variable --- failed re-building 'Example_analysis.Rmd' --- re-building 'Vignette.Rmd' using rmarkdown Quitting from Vignette.Rmd:159-169 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `survfit.formula()`: ! the etype argument is no longer supported, use a factor as the status variable --- Backtrace:     ▆  1. └─jointCompRisk::do_cif_analysis(mydata_std, tau = 15)  2. └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)  3. └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)  4. ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)  5. └─survival::survfit.formula(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Vignette.Rmd' failed with diagnostics: the etype argument is no longer supported, use a factor as the status variable --- failed re-building 'Vignette.Rmd' SUMMARY: processing the following files failed:   'Example_analysis.Rmd' 'Vignette.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [2s] OK
• DONE

Status: 2 ERRORs