* installing *source* package 'houba' ... ** this is package 'houba' version '0.1.0' ** package 'houba' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.2.0' make[1]: Entering directory '/d/temp/2025_10_01_01_50_00_6245/RtmpOYg7ah/R.INSTALL1862445294695/houba/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MMatrixToRArray.cpp -o MMatrixToRArray.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MMatrixToRMatrix.cpp -o MMatrixToRMatrix.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c colSums.cpp -o colSums.o In file included from ../inst/include/houba/MMatrix.h:5, from colSums.cpp:1: ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 14]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:20:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 20 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 14]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:23:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 23 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = int]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 14]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:26:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 26 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = short int]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 14]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:29:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 29 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = float]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 13]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:20:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 20 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = double]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 13]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:23:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 23 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = int]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 13]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:26:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 26 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = short int]': colSums.cpp:11:23: required from 'void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 13]' 11 | instanc->colSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:29:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 29 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ colSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 439 | if(result.size() != ncol_) | ~~~~~~~~~~~~~~^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c copy_values.cpp -o copy_values.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cw_arithmetic.cpp -o cw_arithmetic.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract_marray.cpp -o extract_marray.o In file included from ../inst/include/houba/MMatrix.h:5, from extract_marray.cpp:1: ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]': extract_marray.cpp:15:27: required from here 15 | instanc->extract_array(IND, tar); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 377 | if(le != target.size()) | ~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]': extract_marray.cpp:20:27: required from here 20 | instanc->extract_array(IND, tar); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 377 | if(le != target.size()) | ~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<13>; T = int]': extract_marray.cpp:25:27: required from here 25 | instanc->extract_array(IND, tar); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 377 | if(le != target.size()) | ~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<13>; T = short int]': extract_marray.cpp:30:27: required from here 30 | instanc->extract_array(IND, tar); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 377 | if(le != target.size()) | ~~~^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract_mmatrix.cpp -o extract_mmatrix.o In file included from ../inst/include/houba/MMatrix.h:5, from extract_mmatrix.cpp:1: ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<float>; T = float]': extract_mmatrix.cpp:34:28: required from here 34 | instanc->extract_matrix(I, J, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 355 | if(I.size() * J.size() != target.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<double>; T = double]': extract_mmatrix.cpp:38:28: required from here 38 | instanc->extract_matrix(I, J, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 355 | if(I.size() * J.size() != target.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<int>; T = int]': extract_mmatrix.cpp:42:28: required from here 42 | instanc->extract_matrix(I, J, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 355 | if(I.size() * J.size() != target.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<short int>; T = short int]': extract_mmatrix.cpp:46:28: required from here 46 | instanc->extract_matrix(I, J, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 355 | if(I.size() * J.size() != target.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract_mvector.cpp -o extract_mvector.o In file included from ../inst/include/houba/MMatrix.h:5, from extract_mvector.cpp:1: ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<float>; T = float]': extract_mvector.cpp:34:28: required from here 34 | instanc->extract_vector(I, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 338 | if(I.size() != target.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<double>; T = double]': extract_mvector.cpp:38:28: required from here 38 | instanc->extract_vector(I, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 338 | if(I.size() != target.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<int>; T = int]': extract_mvector.cpp:42:28: required from here 42 | instanc->extract_vector(I, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 338 | if(I.size() != target.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<short int>; T = short int]': extract_mvector.cpp:46:28: required from here 46 | instanc->extract_vector(I, *tar); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 338 | if(I.size() != target.size()) | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flush.cpp -o flush.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c isnullptr.cpp -o isnullptr.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c link_marray.cpp -o link_marray.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c link_mmatrix.cpp -o link_mmatrix.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c print_debug.cpp -o print_debug.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rowSums.cpp -o rowSums.o In file included from ../inst/include/houba/MMatrix.h:5, from rowSums.cpp:1: ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 14]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:20:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 20 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 14]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:23:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 23 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = int]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 14]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:26:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 26 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = short int]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 14]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:29:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 29 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:25:10: required from here 25 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = float]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 13]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:20:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 20 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = double]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 13]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:23:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 23 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = int]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 13]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:26:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 26 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ ../inst/include/houba/MMatrix-methods.h: In instantiation of 'void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = short int]': rowSums.cpp:11:23: required from 'void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 13]' 11 | instanc->rowSums(result); | ~~~~~~~~~~~~~~~~^~~~~~~~ apply.h:29:6: required from 'void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]' 29 | F(instanc, r_vector); | ~^~~~~~~~~~~~~~~~~~~ rowSums.cpp:31:10: required from here 31 | apply_R(pM, datatype, result, x); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 454 | if(result.size() != nrow_) | ~~~~~~~~~~~~~~^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c set_values_marray.cpp -o set_values_marray.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c set_values_mmatrix.cpp -o set_values_mmatrix.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I ../inst/include/houba/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c setdims.cpp -o setdims.o g++ -std=gnu++17 -shared -s -static-libgcc -o houba.dll tmp.def MMatrixToRArray.o MMatrixToRMatrix.o RcppExports.o colSums.o copy_values.o cw_arithmetic.o extract_marray.o extract_mmatrix.o extract_mvector.o flush.o isnullptr.o link_marray.o link_mmatrix.o print_debug.o rowSums.o set_values_marray.o set_values_mmatrix.o setdims.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR make[1]: Leaving directory '/d/temp/2025_10_01_01_50_00_6245/RtmpOYg7ah/R.INSTALL1862445294695/houba/src' make[1]: Entering directory '/d/temp/2025_10_01_01_50_00_6245/RtmpOYg7ah/R.INSTALL1862445294695/houba/src' make[1]: Leaving directory '/d/temp/2025_10_01_01_50_00_6245/RtmpOYg7ah/R.INSTALL1862445294695/houba/src' installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-houba/00new/houba/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'apply' from package 'base' in package 'houba' Creating a generic function for 'colMeans' from package 'base' in package 'houba' Creating a generic function for 'colSums' from package 'base' in package 'houba' Creating a generic function for 'rowMeans' from package 'base' in package 'houba' Creating a generic function for 'rowSums' from package 'base' in package 'houba' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'houba' as houba_0.1.0.zip * DONE (houba)