• using R version 4.6.1 (2026-06-24 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-10-14 15:15:42 UTC
• checking for file 'freesurfer/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'freesurfer' version '1.9.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'freesurfer' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [5s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [27s] ERROR   Running 'testthat.R' [27s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(withr)   > library(freesurfer)   >   > test_check("freesurfer")   Starting 2 test processes.   > test-mri_convert.R: v Converting from NIfTI to FreeSurfer format   > test-mri_convert.R: i nii.gz -> mgz   > test-mri_convert.R: v Converting from NIfTI to FreeSurfer format   > test-mri_convert.R: i nii.gz -> mgz   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c679e342a.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c75ba549d.txt   > test-mris_euler_number.R: v Euler number calculation completed   > test-mris_euler_number.R: i Results: euler = 2   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c17977b11.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c358ec86.txt   > test-mris_euler_number.R: v Euler number calculation completed   > test-mris_euler_number.R: i Results: euler = 2   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c24da426b.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c6b1b3e14.txt   > test-mris_euler_number.R: v Euler number calculation completed   > test-mris_euler_number.R: i Results: euler = 2   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226ceb57bf0.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c4e08894.txt   > test-mris_euler_number.R: v Euler number calculation completed   > test-mris_euler_number.R: i Results: euler = 2   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c36427498.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c1f2748f6.txt   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c108e3053.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c551a10ae.txt   > test-mris_euler_number.R: v Euler number calculation completed   > test-mris_euler_number.R: i Results: euler number = 2   > test-mris_euler_number.R: v Calculating Euler number for surface   > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c74892e50.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c66592052.txt   > test-recon_all.R: mock_fs/ recon-all -subjid file6226c219d587e -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08" -i D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08/test_subject\file6226c219d587e.nii -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08"   > test-reconner.R: mock/path recon-all -subjid subject01 -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all   > test-reconner.R: mock/path recon-all -subjid subject01 -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c2388d44" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all   > test-reconner.R: mock/path recon-all -subjid input_file -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c757b7d35" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input_file.nii -all   > test-tracker.R:      Error:   ! testthat subprocess exited in file 'test-tracker.R'.   Caused by error:   ! R session crashed with exit code -1073741819   Backtrace:        ▆     1. └─testthat::test_check("freesurfer")     2. └─testthat::test_dir(...)     3. └─testthat:::test_files(...)     4. └─testthat:::test_files_parallel(...)     5. ├─withr::with_dir(...)     6. │ └─base::force(code)     7. ├─testthat::with_reporter(...)     8. │ └─base::tryCatch(...)     9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")    13. └─queue$poll(Inf)    14. └─base::lapply(...)    15. └─testthat (local) FUN(X[[i]], ...)    16. └─private$handle_error(msg, i)    17. └─cli::cli_abort(...)    18. └─rlang::abort(...)   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [13s] OK
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [14s] OK
• DONE

Status: 1 ERROR