* installing *source* package 'covdepGE' ...
** this is package 'covdepGE' version '1.0.1'
** package 'covdepGE' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
using C++11
make[1]: Entering directory '/d/temp/2025_07_26_01_50_00_9596/RtmpUBM28B/R.INSTALL1f840457e31c8/covdepGE/src'
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c code.cpp -o code.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c covdepGE_c.cpp -o covdepGE_c.o
covdepGE_c.cpp: In function 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)':
covdepGE_c.cpp:346:5: warning: 'elbo_best' may be used uninitialized [-Wmaybe-uninitialized]
346 | if (elbo_best < elbo_new or j == 0){
| ^~
covdepGE_c.cpp:319:10: note: 'elbo_best' was declared here
319 | double elbo_best, elbo_new;
| ^~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/RcppCommon.h:192,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
from covdepGE_c.cpp:1:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:471:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:495:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/converter.h:80:23,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:530:13,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:523:46,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:512:34,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1169:24,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1146:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1128:50,
inlined from 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)' at covdepGE_c.cpp:363:40:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: 'ssq_best' may be used uninitialized [-Wmaybe-uninitialized]
448 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
covdepGE_c.cpp: In function 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)':
covdepGE_c.cpp:325:10: note: 'ssq_best' was declared here
325 | double ssq_best, sbsq_best, pip_best;
| ^~~~~~~~
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:471:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:495:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/converter.h:80:23,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:530:13,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:523:46,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:512:34,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1169:24,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1146:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1128:50,
inlined from 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)' at covdepGE_c.cpp:363:40:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: 'sbsq_best' may be used uninitialized [-Wmaybe-uninitialized]
448 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
covdepGE_c.cpp: In function 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)':
covdepGE_c.cpp:325:20: note: 'sbsq_best' was declared here
325 | double ssq_best, sbsq_best, pip_best;
| ^~~~~~~~~
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:471:46,
inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:495:40,
inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:744:34,
inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/converter.h:80:23,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:530:13,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:523:46,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:512:34,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1169:24,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Mat<double> >; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1146:29,
inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<arma::Mat<double> >, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/vector/Vector.h:1128:50,
inlined from 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)' at covdepGE_c.cpp:363:40:
D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: 'pip_best' may be used uninitialized [-Wmaybe-uninitialized]
448 | r_vector_start<RTYPE>(x)[0] = object;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
covdepGE_c.cpp: In function 'Rcpp::List grid_search_c(const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::colvec&, const arma::colvec&, double, int)':
covdepGE_c.cpp:325:31: note: 'pip_best' was declared here
325 | double ssq_best, sbsq_best, pip_best;
| ^~~~~~~~
g++ -shared -s -static-libgcc -o covdepGE.dll tmp.def RcppExports.o code.o covdepGE_c.o -fopenmp -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_07_26_01_50_00_9596/RtmpUBM28B/R.INSTALL1f840457e31c8/covdepGE/src'
make[1]: Entering directory '/d/temp/2025_07_26_01_50_00_9596/RtmpUBM28B/R.INSTALL1f840457e31c8/covdepGE/src'
make[1]: Leaving directory '/d/temp/2025_07_26_01_50_00_9596/RtmpUBM28B/R.INSTALL1f840457e31c8/covdepGE/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-covdepGE/00new/covdepGE/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'covdepGE' as covdepGE_1.0.1.zip
* DONE (covdepGE)