* installing *source* package 'colvR' ...
** this is package 'colvR' version '0.2.2'
** package 'colvR' successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2026_11_14_01_50_00_6838/RtmpGIxT5I/R.INSTALL1c4ea0685b6204/colvR/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nlopt_wrapper.cpp -o nlopt_wrapper.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP.cpp -o optim_rank_ZIP.o
In file included from optim_rank_ZIP.cpp:15:
Elbo_gradBB.h: In function 'std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)':
Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable]
107 | int n = Y.n_rows;
| ^
Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable]
108 | int p = Y.n_cols;
| ^
Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable]
109 | int q = M.n_cols;
| ^
optim_rank_ZIP.cpp: In lambda function:
optim_rank_ZIP.cpp:224:9: warning: unused variable 'q' [-Wunused-variable]
224 | int q = M.n_cols;
| ^
optim_rank_ZIP.cpp:225:9: warning: unused variable 'd' [-Wunused-variable]
225 | int d = X.n_cols;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_M.cpp -o optim_rank_ZIP_M.o
In file included from optim_rank_ZIP_M.cpp:15:
Elbo_gradBB.h: In function 'std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)':
Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable]
107 | int n = Y.n_rows;
| ^
Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable]
108 | int p = Y.n_cols;
| ^
Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable]
109 | int q = M.n_cols;
| ^
optim_rank_ZIP_M.cpp: In lambda function:
optim_rank_ZIP_M.cpp:123:9: warning: unused variable 'd' [-Wunused-variable]
123 | int d = X.n_cols;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_VE.cpp -o optim_rank_ZIP_VE.o
In file included from optim_rank_ZIP_VE.cpp:15:
Elbo_gradBB.h: In function 'std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)':
Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable]
107 | int n = Y.n_rows;
| ^
Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable]
108 | int p = Y.n_cols;
| ^
Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable]
109 | int q = M.n_cols;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_alternate.cpp -o optim_rank_ZIP_alternate.o
In file included from optim_rank_ZIP_alternate.cpp:15:
Elbo_gradBB.h: In function 'std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)':
Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable]
107 | int n = Y.n_rows;
| ^
Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable]
108 | int p = Y.n_cols;
| ^
Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable]
109 | int q = M.n_cols;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_ZIP_q0.cpp -o optim_rank_ZIP_q0.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov.cpp -o optim_rank_cov.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov_inter.cpp -o optim_rank_cov_inter.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_zip_log.cpp -o optim_rank_zip_log.o
In file included from optim_rank_zip_log.cpp:15:
Elbo_gradBB.h: In function 'std::tuple<arma::Mat<double>, double, double, double, double, double, double, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<double> > Elbo_grad_LogS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, double)':
Elbo_gradBB.h:107:9: warning: unused variable 'n' [-Wunused-variable]
107 | int n = Y.n_rows;
| ^
Elbo_gradBB.h:108:9: warning: unused variable 'p' [-Wunused-variable]
108 | int p = Y.n_cols;
| ^
Elbo_gradBB.h:109:9: warning: unused variable 'q' [-Wunused-variable]
109 | int q = M.n_cols;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.2/include" -DNDEBUG -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilsBB.cpp -o utilsBB.o
utilsBB.cpp: In function 'arma::mat GradB(const arma::vec&, const arma::mat&, const arma::vec&, const arma::vec&, const arma::vec&)':
utilsBB.cpp:132:7: warning: unused variable 'l' [-Wunused-variable]
132 | int l = vecY.size();
| ^
utilsBB.cpp: In function 'arma::mat GradC(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)':
utilsBB.cpp:150:7: warning: unused variable 'n' [-Wunused-variable]
150 | int n = Y.n_rows;
| ^
utilsBB.cpp:151:7: warning: unused variable 'p' [-Wunused-variable]
151 | int p = Y.n_cols;
| ^
utilsBB.cpp: In function 'arma::mat GradM(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)':
utilsBB.cpp:175:7: warning: unused variable 'n' [-Wunused-variable]
175 | int n = Y.n_rows;
| ^
utilsBB.cpp:176:7: warning: unused variable 'p' [-Wunused-variable]
176 | int p = Y.n_cols;
| ^
utilsBB.cpp: In function 'arma::mat GradS(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&)':
utilsBB.cpp:200:7: warning: unused variable 'n' [-Wunused-variable]
200 | int n = A.n_rows;
| ^
utilsBB.cpp:201:7: warning: unused variable 'p' [-Wunused-variable]
201 | int p = A.n_cols;
| ^
g++ -shared -s -static-libgcc -o colvR.dll tmp.def RcppExports.o nlopt_wrapper.o optim_rank_ZIP.o optim_rank_ZIP_M.o optim_rank_ZIP_VE.o optim_rank_ZIP_alternate.o optim_rank_ZIP_q0.o optim_rank_cov.o optim_rank_cov_inter.o optim_rank_zip_log.o utilsBB.o -lnlopt -LD:/RCompile/recent/R-4.6.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.6.2/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.6.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_11_14_01_50_00_6838/RtmpGIxT5I/R.INSTALL1c4ea0685b6204/colvR/src'
make[1]: Entering directory '/d/temp/2026_11_14_01_50_00_6838/RtmpGIxT5I/R.INSTALL1c4ea0685b6204/colvR/src'
make[1]: Leaving directory '/d/temp/2026_11_14_01_50_00_6838/RtmpGIxT5I/R.INSTALL1c4ea0685b6204/colvR/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-colvR/00new/colvR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'colvR' as colvR_0.2.2.zip
* DONE (colvR)