* installing *source* package 'cit' ...
** this is package 'cit' version '2.3.2'
** package 'cit' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_04_08_01_50_00_24830/Rtmpmicq0Z/R.INSTALL289a47a81c7e/cit/src'
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c cit_init.c -o cit_init.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c citconlog2.cpp -o citconlog2.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c citconlog2cvr.cpp -o citconlog2cvr.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c citconlog3_perm.cpp -o citconlog3_perm.o
citconlog3_perm.cpp: In function 'void citconlog3p(double*, double*, double*, int&, int&, double*, double*, double*, double*, int&, int&, int&, int*)':
citconlog3_perm.cpp:50:22: warning: variable 'cc' set but not used [-Wunused-but-set-variable]
   50 |         bool aa, bb, cc, converged, permute;
      |                      ^~
citconlog3_perm.cpp:453:17: warning: 'pvalind' may be used uninitialized [-Wmaybe-uninitialized]
  453 |                 if( pvp > pvalind ) npos++;
      |                 ^~
citconlog3_perm.cpp:48:41: note: 'pvalind' was declared here
   48 |         double rss2, rss3, rss5, F, pv, pvalind, pvp, tmp, rhs;
      |                                         ^~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c citconlog3cvr_perm.cpp -o citconlog3cvr_perm.o
citconlog3cvr_perm.cpp: In function 'void citconlog3pcvr(double*, double*, double*, double*, int&, int&, int&, double*, double*, double*, double*, int&, int&, int&, int*)':
citconlog3cvr_perm.cpp:49:22: warning: variable 'cc' set but not used [-Wunused-but-set-variable]
   49 |         bool aa, bb, cc, converged, permute;
      |                      ^~
citconlog3cvr_perm.cpp:484:17: warning: 'pvalind' may be used uninitialized [-Wmaybe-uninitialized]
  484 |                 if( pvp > pvalind ) npos++;
      |                 ^~
citconlog3cvr_perm.cpp:47:41: note: 'pvalind' was declared here
   47 |         double rss2, rss3, rss5, F, pv, pvalind, pvp, tmp, rhs;
      |                                         ^~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I/include    -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c logisticfunc.cpp -o logisticfunc.o
g++ -std=gnu++17 -shared -s -static-libgcc -o cit.dll tmp.def cit_init.o citconlog2.o citconlog2cvr.o citconlog3_perm.o citconlog3cvr_perm.o logisticfunc.o -L/lib -lgsl -lgslcblas -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_04_08_01_50_00_24830/Rtmpmicq0Z/R.INSTALL289a47a81c7e/cit/src'
make[1]: Entering directory '/d/temp/2025_04_08_01_50_00_24830/Rtmpmicq0Z/R.INSTALL289a47a81c7e/cit/src'
make[1]: Leaving directory '/d/temp/2025_04_08_01_50_00_24830/Rtmpmicq0Z/R.INSTALL289a47a81c7e/cit/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-cit/00new/cit/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'cit' as cit_2.3.2.zip
* DONE (cit)