* installing *source* package 'beyondWhittle' ...
** this is package 'beyondWhittle' version '1.3.0'
** package 'beyondWhittle' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.3.0'
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2025_11_08_01_50_00_24415/RtmpoXto2a/R.INSTALL5b28782f6443/beyondWhittle/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from bernstein_gamma_psd.h:4,
from beyondWhittle_types.h:1,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c a_gamma_process_prior.cpp -o a_gamma_process_prior.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from a_gamma_process_prior.h:4,
from a_gamma_process_prior.cpp:19:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c arma.cpp -o arma.o
arma.cpp: In function 'Rcpp::NumericMatrix pacf2AR(Rcpp::NumericVector)':
arma.cpp:34:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
34 | for (int r=1; r <= p-j; ++r) {
| ~~^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bernstein_gamma_psd.cpp -o bernstein_gamma_psd.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from bernstein_gamma_psd.h:4,
from bernstein_gamma_psd.cpp:20:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gibbs_np_help.cpp -o gibbs_np_help.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gibbs_vnp_algorithm.cpp -o gibbs_vnp_algorithm.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from gibbs_vnp_algorithm.h:4,
from gibbs_vnp_algorithm.cpp:14:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gibbs_vnp_algorithm.cpp: In function 'Rcpp::List gibbs_multivariate_nuisance_cpp(arma::mat, Rcpp::IntegerVector, arma::cx_mat, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, int, arma::vec, arma::vec, arma::mat, arma::vec, double, double, arma::cx_mat, int, int, double, bool, int, double, Rcpp::List)':
gibbs_vnp_algorithm.cpp:51:13: warning: unused variable 'n' [-Wunused-variable]
51 | const int n=data.n_rows;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gibbs_vnp_help.cpp -o gibbs_vnp_help.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from gibbs_vnp_help.h:4,
from gibbs_vnp_help.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gibbs_vnp_help.cpp: In function 'double llike_whittle(const arma::cx_mat&, const arma::cx_cube&)':
gibbs_vnp_help.cpp:56:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
56 | for (unsigned j=1; j < N-1; ++j) {
| ~~^~~~~
gibbs_vnp_help.cpp: In function 'arma::cx_mat mdft_cpp(const arma::mat&)':
gibbs_vnp_help.cpp:94:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
94 | for (unsigned j=1; j<n; ++j) {
| ~^~
gibbs_vnp_help.cpp: In function 'void mean_center(arma::mat&)':
gibbs_vnp_help.cpp:113:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
113 | for (int j=0; j<x.n_rows; ++j) {
| ~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrix_cube.cpp -o matrix_cube.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from matrix_cube.h:4,
from matrix_cube.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc.cpp -o misc.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from misc.h:4,
from misc.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
misc.cpp: In function 'Rcpp::NumericMatrix acvMatrix(Rcpp::NumericVector)':
misc.cpp:13:19: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
13 | for (int i=0; i < p; ++i) {
| ~~^~~
misc.cpp:14:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
14 | for (int j=0; j < p; ++j) {
| ~~^~~
misc.cpp: In function 'arma::mat acvBlockMatrix(arma::mat)':
misc.cpp:30:19: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
30 | for (int i=0; i < p; ++i) {
| ~~^~~
misc.cpp:31:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
31 | for (int j=0; j < p; ++j) {
| ~~^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c qpsd_cal_cpp_expedited.cpp -o qpsd_cal_cpp_expedited.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from qpsd_cal_cpp_expedited.cpp:6:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c unit_trace.cpp -o unit_trace.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from unit_trace.h:4,
from unit_trace.cpp:16:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
unit_trace.cpp: In function 'arma::cx_mat unit_trace_U_from_phi_cpp(const arma::vec&)':
unit_trace.cpp:38:18: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
38 | for (int i=0; i<d; ++i) {
| ~^~
unit_trace.cpp: In function 'arma::cx_mat unit_trace_L_from_x(arma::vec)':
unit_trace.cpp:88:18: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
88 | for (int i=0; i<d; ++i) {
| ~^~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c varma.cpp -o varma.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from varma.h:4,
from varma.cpp:2:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o beyondWhittle.dll tmp.def RcppExports.o a_gamma_process_prior.o arma.o bernstein_gamma_psd.o gibbs_np_help.o gibbs_vnp_algorithm.o gibbs_vnp_help.o matrix_cube.o misc.o qpsd_cal_cpp_expedited.o registerDynamicSymbol.o unit_trace.o varma.o -LD:/RCompile/recent/R-4.5.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.2/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_11_08_01_50_00_24415/RtmpoXto2a/R.INSTALL5b28782f6443/beyondWhittle/src'
make[1]: Entering directory '/d/temp/2025_11_08_01_50_00_24415/RtmpoXto2a/R.INSTALL5b28782f6443/beyondWhittle/src'
make[1]: Leaving directory '/d/temp/2025_11_08_01_50_00_24415/RtmpoXto2a/R.INSTALL5b28782f6443/beyondWhittle/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-beyondWhittle/00new/beyondWhittle/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'beyondWhittle' as beyondWhittle_1.3.0.zip
* DONE (beyondWhittle)