* installing *source* package 'bayestransmission' ...
** this is package 'bayestransmission' version '0.1.0'
** package 'bayestransmission' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2025_12_30_01_50_00_15946/Rtmpuy6Tb7/R.INSTALL52141c961608/bayestransmission/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CodeToEvent.cpp -o CodeToEvent.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_AbxCoding.cpp -o infect/infect_AbxCoding.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_AbxLocationState.cpp -o infect/infect_AbxLocationState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_AbxPatientState.cpp -o infect/infect_AbxPatientState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_CountLocationState.cpp -o infect/infect_CountLocationState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Episode.cpp -o infect/infect_Episode.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_EpisodeHistory.cpp -o infect/infect_EpisodeHistory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Event.cpp -o infect/infect_Event.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Facility.cpp -o infect/infect_Facility.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_HistoryLink.cpp -o infect/infect_HistoryLink.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_LocationState.cpp -o infect/infect_LocationState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Model.cpp -o infect/infect_Model.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Patient.cpp -o infect/infect_Patient.o
In file included from ./infect/../util/util.h:15,
from ./infect/infect.h:16,
from infect/infect_Patient.cpp:1:
./infect/../util/Object.h:25:21: warning: 'virtual int util::Object::compare(util::Object*)' was hidden [-Woverloaded-virtual=]
25 | virtual int compare(Object *y);
| ^~~~~~~
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:13: note: by 'int infect::RawEvent::compare(const util::Object*) const'
23 | int compare (Object const * const e) const;
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_PatientState.cpp -o infect/infect_PatientState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_RawEvent.cpp -o infect/infect_RawEvent.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_Sampler.cpp -o infect/infect_Sampler.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_SetLocationState.cpp -o infect/infect_SetLocationState.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_State.cpp -o infect/infect_State.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_System.cpp -o infect/infect_System.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_SystemEpisodeHistory.cpp -o infect/infect_SystemEpisodeHistory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_SystemHistory.cpp -o infect/infect_SystemHistory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c infect/infect_UnitEpisodeHistory.cpp -o infect/infect_UnitEpisodeHistory.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LinearAbxICP2.cpp -o lognormal/lognormal_LinearAbxICP2.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LinearAbxICP.cpp -o lognormal/lognormal_LinearAbxICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LinearAbxModel2.cpp -o lognormal/lognormal_LinearAbxModel2.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LinearAbxModel.cpp -o lognormal/lognormal_LinearAbxModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LogNormalAbxICP.cpp -o lognormal/lognormal_LogNormalAbxICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LogNormalICP.cpp -o lognormal/lognormal_LogNormalICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LogNormalMassAct.cpp -o lognormal/lognormal_LogNormalMassAct.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_LogNormalModel.cpp -o lognormal/lognormal_LogNormalModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_MixedICP.cpp -o lognormal/lognormal_MixedICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lognormal/lognormal_MultiUnitAbxICP.cpp -o lognormal/lognormal_MultiUnitAbxICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Markov.cpp -o Markov.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/modeling_Parameters.cpp -o modeling/modeling_Parameters.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/modeling_TestParams.cpp -o modeling/modeling_TestParams.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_AbxParams.cpp -o modeling/models_AbxParams.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_ConstrainedSimulator.cpp -o modeling/models_ConstrainedSimulator.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_DummyModel.cpp -o modeling/models_DummyModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_ForwardSimulator.cpp -o modeling/models_ForwardSimulator.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_InsituParams.cpp -o modeling/models_InsituParams.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_MassActionICP.cpp -o modeling/models_MassActionICP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_MassActionModel.cpp -o modeling/models_MassActionModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_Options.cpp -o modeling/models_Options.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_OutColParams.cpp -o modeling/models_OutColParams.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_RandomTestParams.cpp -o modeling/models_RandomTestParams.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_TestParamsAbx.cpp -o modeling/models_TestParamsAbx.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c modeling/models_UnitLinkedModel.cpp -o modeling/models_UnitLinkedModel.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module.cpp -o Module.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module-Infect.cpp -o Module-Infect.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module-Infect-System.cpp -o Module-Infect-System.o
In file included from infect/../util/util.h:15,
from infect/infect.h:16,
from Module-Infect-System.cpp:1:
infect/../util/Object.h:25:21: warning: 'virtual int util::Object::compare(util::Object*)' was hidden [-Woverloaded-virtual=]
25 | virtual int compare(Object *y);
| ^~~~~~~
In file included from infect/infect.h:29:
infect/RawEvent.h:23:13: note: by 'int infect::RawEvent::compare(const util::Object*) const'
23 | int compare (Object const * const e) const;
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module-lognormal.cpp -o Module-lognormal.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module-models.cpp -o Module-models.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Module-utils.cpp -o Module-utils.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Random.cpp -o Random.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RRandom.cpp -o RRandom.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c runMCMC.cpp -o runMCMC.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util/util.cc -o util/util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util/util_Integer.cpp -o util/util_Integer.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util/util_List.cpp -o util/util_List.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util/util_Object.cpp -o util/util_Object.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util/util_Vector.cpp -o util/util_Vector.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrap.cpp -o wrap.o
g++ -shared -s -static-libgcc -o bayestransmission.dll tmp.def CodeToEvent.o infect/infect_AbxCoding.o infect/infect_AbxLocationState.o infect/infect_AbxPatientState.o infect/infect_CountLocationState.o infect/infect_Episode.o infect/infect_EpisodeHistory.o infect/infect_Event.o infect/infect_Facility.o infect/infect_HistoryLink.o infect/infect_LocationState.o infect/infect_Model.o infect/infect_Patient.o infect/infect_PatientState.o infect/infect_RawEvent.o infect/infect_Sampler.o infect/infect_SetLocationState.o infect/infect_State.o infect/infect_System.o infect/infect_SystemEpisodeHistory.o infect/infect_SystemHistory.o infect/infect_UnitEpisodeHistory.o lognormal/lognormal_LinearAbxICP2.o lognormal/lognormal_LinearAbxICP.o lognormal/lognormal_LinearAbxModel2.o lognormal/lognormal_LinearAbxModel.o lognormal/lognormal_LogNormalAbxICP.o lognormal/lognormal_LogNormalICP.o lognormal/lognormal_LogNormalMassAct.o lognormal/lognormal_LogNormalModel.o lognormal/lognormal_MixedICP.o lognormal/lognormal_MultiUnitAbxICP.o Markov.o modeling/modeling_Parameters.o modeling/modeling_TestParams.o modeling/models_AbxParams.o modeling/models_ConstrainedSimulator.o modeling/models_DummyModel.o modeling/models_ForwardSimulator.o modeling/models_InsituParams.o modeling/models_MassActionICP.o modeling/models_MassActionModel.o modeling/models_Options.o modeling/models_OutColParams.o modeling/models_RandomTestParams.o modeling/models_TestParamsAbx.o modeling/models_UnitLinkedModel.o Module.o Module-Infect.o Module-Infect-System.o Module-lognormal.o Module-models.o Module-utils.o Random.o RcppExports.o RRandom.o runMCMC.o util/util.o util/util_Integer.o util/util_List.o util/util_Object.o util/util_Vector.o wrap.o -LD:/RCompile/recent/R-4.5.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.2/bin/x64 -lRblas -lgfortran -lquadmath -lstdc++ -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_12_30_01_50_00_15946/Rtmpuy6Tb7/R.INSTALL52141c961608/bayestransmission/src'
make[1]: Entering directory '/d/temp/2025_12_30_01_50_00_15946/Rtmpuy6Tb7/R.INSTALL52141c961608/bayestransmission/src'
make[1]: Leaving directory '/d/temp/2025_12_30_01_50_00_15946/Rtmpuy6Tb7/R.INSTALL52141c961608/bayestransmission/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-bayestransmission/00new/bayestransmission/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'bayestransmission' as bayestransmission_0.1.0.zip
* DONE (bayestransmission)