* installing *source* package 'TDAstats' ...
** this is package 'TDAstats' version '0.4.2'
** package 'TDAstats' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_02_25_01_50_00_9182/Rtmp8oS7wD/R.INSTALL10f78453f7110/TDAstats/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2p/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.2p/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ripser_short.cpp -o ripser_short.o
ripser_short.cpp: In function 'bool is_prime(coefficient_t_ripser)':
ripser_short.cpp:52:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
52 | for (coefficient_t_ripser p = 3, q = n / p, r = n % p; p <= q; p += 2, q = n / p, r = n % p)
| ^~~
ripser_short.cpp:54:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
54 | return true;
| ^~~~~~
ripser_short.cpp: In member function 'value_t_ripser rips_filtration_comparator<DistanceMatrix>::diameter(index_t_ripser) const':
ripser_short.cpp:178:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
178 | for (index_t_ripser i = 0; i <= dim; ++i)
| ^~~
ripser_short.cpp:180:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
180 | return diam;
| ^~~~~~
ripser_short.cpp: In member function 'void compressed_distance_matrix<Layout>::init_rows() [with compressed_matrix_layout Layout = LOWER_TRIANGULAR]':
ripser_short.cpp:268:32: warning: comparison of integer expressions of different signedness: 'index_t_ripser' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
268 | for (index_t_ripser i = 1; i < size(); ++i) {
| ~~^~~~~~~~
ripser_short.cpp: In member function 'void compressed_distance_matrix<Layout>::init_rows() [with compressed_matrix_layout Layout = UPPER_TRIANGULAR]':
ripser_short.cpp:276:32: warning: comparison of integer expressions of different signedness: 'index_t_ripser' {aka 'long long int'} and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
276 | for (index_t_ripser i = 0; i < size() - 1; ++i) {
| ~~^~~~~~~~~~~~
ripser_short.cpp: In function 'compressed_lower_distance_matrix getLowerDistMatrix(const Rcpp::NumericMatrix&)':
ripser_short.cpp:570:17: warning: unused variable 'numCols' [-Wunused-variable]
570 | numCols = inputMat.ncol();
| ^~~~~~~
ripser_short.cpp: In instantiation of 'Rcpp::NumericVector ripser_compute(const DistanceMatrix&, int, float, int) [with DistanceMatrix = compressed_distance_matrix<UPPER_TRIANGULAR>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
ripser_short.cpp:691:23: required from here
691 | return ripser_compute(dist, dim, thresh, p);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:677:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
677 | for (int i = 0; i < pers_hom.size(); i++){
| ~~^~~~~~~~~~~~~~~~~
ripser_short.cpp: In instantiation of 'Rcpp::NumericVector ripser_compute(const DistanceMatrix&, int, float, int) [with DistanceMatrix = compressed_distance_matrix<LOWER_TRIANGULAR>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
ripser_short.cpp:707:24: required from here
707 | return ripser_compute(dist, dim, thresh, p);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:677:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
677 | for (int i = 0; i < pers_hom.size(); i++){
| ~~^~~~~~~~~~~~~~~~~
ripser_short.cpp: In instantiation of 'void compute_pairs(std::vector<diameter_index_t>&, hash_map<long long int, long long int>&, index_t_ripser, index_t_ripser, value_t_ripser, coefficient_t_ripser, const std::vector<unsigned char>&, const DistanceMatrix&, const ComparatorCofaces&, const Comparator&, const binomial_coeff_table&, std::vector<std::vector<double> >&) [with DistanceMatrix = compressed_distance_matrix<UPPER_TRIANGULAR>; ComparatorCofaces = rips_filtration_comparator<const compressed_distance_matrix<UPPER_TRIANGULAR>&>; Comparator = rips_filtration_comparator<const compressed_distance_matrix<UPPER_TRIANGULAR>&>; index_t_ripser = long long int; value_t_ripser = double; coefficient_t_ripser = unsigned char]':
ripser_short.cpp:667:18: required from 'Rcpp::NumericVector ripser_compute(const DistanceMatrix&, int, float, int) [with DistanceMatrix = compressed_distance_matrix<UPPER_TRIANGULAR>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]'
667 | compute_pairs(columns_to_reduce, pivot_column_index, dim, n, threshold, modulus, multiplicative_inverse, dist,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
668 | comp, comp_prev, binomial_coeff, pers_hom);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:691:23: required from here
691 | return ripser_compute(dist, dim, thresh, p);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:449:32: warning: comparison of integer expressions of different signedness: 'index_t_ripser' {aka 'long long int'} and 'std::vector<diameter_index_t>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
449 | for (index_t_ripser i = 0; i < columns_to_reduce.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp: In instantiation of 'void compute_pairs(std::vector<diameter_index_t>&, hash_map<long long int, long long int>&, index_t_ripser, index_t_ripser, value_t_ripser, coefficient_t_ripser, const std::vector<unsigned char>&, const DistanceMatrix&, const ComparatorCofaces&, const Comparator&, const binomial_coeff_table&, std::vector<std::vector<double> >&) [with DistanceMatrix = compressed_distance_matrix<LOWER_TRIANGULAR>; ComparatorCofaces = rips_filtration_comparator<const compressed_distance_matrix<LOWER_TRIANGULAR>&>; Comparator = rips_filtration_comparator<const compressed_distance_matrix<LOWER_TRIANGULAR>&>; index_t_ripser = long long int; value_t_ripser = double; coefficient_t_ripser = unsigned char]':
ripser_short.cpp:667:18: required from 'Rcpp::NumericVector ripser_compute(const DistanceMatrix&, int, float, int) [with DistanceMatrix = compressed_distance_matrix<LOWER_TRIANGULAR>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]'
667 | compute_pairs(columns_to_reduce, pivot_column_index, dim, n, threshold, modulus, multiplicative_inverse, dist,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
668 | comp, comp_prev, binomial_coeff, pers_hom);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:707:24: required from here
707 | return ripser_compute(dist, dim, thresh, p);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:449:32: warning: comparison of integer expressions of different signedness: 'index_t_ripser' {aka 'long long int'} and 'std::vector<diameter_index_t>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
449 | for (index_t_ripser i = 0; i < columns_to_reduce.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o TDAstats.dll tmp.def RcppExports.o ripser_short.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.2p/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_02_25_01_50_00_9182/Rtmp8oS7wD/R.INSTALL10f78453f7110/TDAstats/src'
make[1]: Entering directory '/d/temp/2026_02_25_01_50_00_9182/Rtmp8oS7wD/R.INSTALL10f78453f7110/TDAstats/src'
make[1]: Leaving directory '/d/temp/2026_02_25_01_50_00_9182/Rtmp8oS7wD/R.INSTALL10f78453f7110/TDAstats/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-TDAstats/00new/TDAstats/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TDAstats' as TDAstats_0.4.2.zip
* DONE (TDAstats)