- using R version 4.4.1 (2024-06-14 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'PSPManalysis/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'PSPManalysis' version '0.3.9'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'PSPManalysis' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 13.2.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking whether startup messages can be suppressed ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [1s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [2s] ERROR
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(PSPManalysis)
Welcome to the PSPManalysis package (version 0.3.9) for anlyzing
physiologically structured population models
Explore the demos (shown by demo(package="PSPManalysis") to get an overview
Also check out the help pages of the exported functions:
PSPMdemo, PSPMecodyn, PSPMequi, PSPMevodyn, PSPMind, PSPMclean, PSPMhelp, csbread and showpspm
For detailed information consult the manual using PSPMhelp()
>
> test_check("PSPManalysis")
Building executable Medflydemo.dll using sources from D:\RCompile\CRANpkg\lib\4.4\PSPManalysis\C ...
── R CMD SHLIB ─────────────────────────────────────────────────────────────────
Compilation of Medflydemo.dll succeeded!
Building executable PNAS2002equi.dll using sources from D:\RCompile\CRANpkg\lib\4.4\PSPManalysis\C ...
── R CMD SHLIB ─────────────────────────────────────────────────────────────────
Compilation of PNAS2002equi.dll succeeded!
Detection of the ESS value of the bifurcation parameter of the structured population (ingestion exponent)
Building executable Indet_growthequi.dll using sources from D:\RCompile\CRANpkg\lib\4.4\PSPManalysis\C ...
── R CMD SHLIB ─────────────────────────────────────────────────────────────────
Compilation of Indet_growthequi.dll succeeded!
Building executable PNAS2002_5bsind.dll using sources from D:\RCompile\CRANpkg\lib\4.4\PSPManalysis\C ...
── R CMD SHLIB ─────────────────────────────────────────────────────────────────
Compilation of PNAS2002_5bsind.dll succeeded!
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.01-Medfly.R:1:1'): (code run outside of `test_that()`) ─────────
Error in `PSPMdemo("Medfly", clean = TRUE, force = TRUE)`:
Executable Medflydemo.dll not found! Computation aborted.
Backtrace:
▆
1. └─PSPManalysis::PSPMdemo("Medfly", clean = TRUE, force = TRUE) at test.01-Medfly.R:1:1
── Error ('test.02-PNAS2002.R:7:1'): (code run outside of `test_that()`) ───────
Error in `PSPMequi("PNAS2002.h", "EQ", c(1e-06, 1e-06), 0.5, c(1, 0, 4e-04),
NULL, options = c("popZE", "0", "envZE", "1", "envZE", "2"),
clean = TRUE, force = TRUE)`:
Executable PNAS2002equi.dll not found! Computation aborted.
Backtrace:
▆
1. └─PSPManalysis::PSPMequi(...)
── Error ('test.03-Indet_growth.R:5:1'): (code run outside of `test_that()`) ───
Error in `PSPMequi("Indet_growth.h", "EQ", c(1, 0.22, 0), -0.1, c(6, 0.5,
2), options = c("popEVO", "0", "report", "2"), clean = TRUE)`:
Executable Indet_growthequi.dll not found! Computation aborted.
Backtrace:
▆
1. └─PSPManalysis::PSPMequi(...)
── Error ('test.04-PNAS2002_5bsind.R:3:1'): (code run outside of `test_that()`) ──
Error in `PSPMind("PNAS2002_5bs", c(1.30341e-05, 3.84655e-05, 4.00802e-06),
pars, options = c("isort", "1"), clean = TRUE, force = TRUE)`:
Executable PNAS2002_5bsind.dll not found! Computation aborted.
Backtrace:
▆
1. └─PSPManalysis::PSPMind(...) at test.04-PNAS2002_5bsind.R:3:1
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [1s] OK
- checking PDF version of manual ... [21s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR