• using R version 4.6.1 (2026-06-24 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-09-29 19:53:57 UTC
• checking for file 'OmopStudyBuilder/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'OmopStudyBuilder' version '0.1.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'OmopStudyBuilder' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE renv was unable to query available packages from the following repositories: - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib ------------- error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22] error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [2s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [42s] ERROR   Running 'testthat.R' [42s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(OmopStudyBuilder)   >   > test_check("OmopStudyBuilder")               renv was unable to query available packages from the following repositories:   - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib -------------   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]         [4/27] [5/27] [6/27] [7/27] [8/27] [9/27] [10/27] [11/27] [12/27] [13/27] [14/27] [15/27] [16/27] [17/27] [18/27] [19/27] [20/27] [21/27] [22/27] [23/27] [24/27] [25/27] [26/27] [27/27] renv was unable to query available packages from the following repositories:   - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib -------------   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]         renv was unable to query available packages from the following repositories:   - # file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6 --------   error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES.rds' [error code 37]   error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES.gz' [error code 37]   error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES' [error code 37]      - # https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6 --------   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES.rds' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES.gz' [error code 22]   error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES' [error code 22]         Saving _problems/test-reviewStudy-25.R   Saving _problems/test-reviewStudy-41.R   [ FAIL 2 | WARN 2 | SKIP 17 | PASS 87 ]      ══ Skipped tests (17) ══════════════════════════════════════════════════════════   • Docker not available (2): 'test-dockerWrapper.R:8:3',     'test-dockerWrapper.R:30:3'   • Integration test - requires built image (1): 'test-dockerWrapper.R:99:3'   • Integration test - requires built image and config file (1):     'test-dockerWrapper.R:107:3'   • Integration test - requires built image and test script (3):     'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3',     'test-dockerWrapper.R:115:3'   • Integration test - requires built rstudio image (4):     'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3',     'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3'   • Integration test - requires running container (2):     'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3'   • Integration test - requires valid renv project (2):     'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3'   • Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2):     'test-linkGitHub.R:289:3', 'test-linkGitHub.R:323:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-reviewStudy.R:22:3'): reviewStudy summarises dependencies ──────   Error in `vapply(downloadable, `[[`, character(1L), "url")`: values must be length 1,    but FUN(X[[1]]) result is length 0   Backtrace:       ▆    1. └─renv::init(...) at test-reviewStudy.R:22:3    2. └─renv::hydrate(...)    3. └─renv:::renv_hydrate_resolve_missing(...)    4. └─renv:::renv_graph_install(descriptions)    5. └─base::vapply(downloadable, `[[`, character(1L), "url")   ── Error ('test-reviewStudy.R:38:3'): reviewStudy works for both code and dependencies ──   Error in `vapply(downloadable, `[[`, character(1L), "url")`: values must be length 1,    but FUN(X[[1]]) result is length 0   Backtrace:       ▆    1. └─renv::init(...) at test-reviewStudy.R:38:3    2. └─renv::hydrate(...)    3. └─renv:::renv_hydrate_resolve_missing(...)    4. └─renv:::renv_graph_install(descriptions)    5. └─base::vapply(downloadable, `[[`, character(1L), "url")      [ FAIL 2 | WARN 2 | SKIP 17 | PASS 87 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s] OK
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [5s] OK
• DONE

Status: 1 ERROR, 1 NOTE