- using R version 4.4.2 (2024-10-31 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'NetworkExtinction/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'NetworkExtinction' version '1.0.3'
- package encoding: UTF-8
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- checking if this is a source package ... OK
- checking if there is a namespace ... OK
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- checking whether package 'NetworkExtinction' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
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- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s] OK
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- checking Rd files ... [1s] NOTE
checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces
35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:52: Lost braces
52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces
71 | primary removals. For example, if a network has five species {A,B,
| ^
checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup?
72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with
| ^
checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup?
77 | vector, i.e., {C,A,B}."
| ^
checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces
38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.}
| ^
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- checking tests ... [3s] OK
Running 'testthat.R' [3s]
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- DONE
Status: 1 NOTE