* installing *source* package 'MMVBVS' ... ** this is package 'MMVBVS' version '0.8.0' ** package 'MMVBVS' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.2.0' make[1]: Entering directory '/d/temp/2025_09_29_01_50_00_31777/RtmpyGulSs/R.INSTALL20ad067805e1a/MMVBVS/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32, from RcppExports.cpp:4: D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmvbvs.cpp -o mmvbvs.o In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32, from mmvbvs.cpp:1: D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ mmvbvs.cpp: In function 'arma::mat em_with_zero_mean_c(arma::mat, int)': mmvbvs.cpp:107:40: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 107 | if (0 < ind.size() && ind.size() < p){ | ~~~~~~~~~~~^~~ mmvbvs.cpp: In function 'Rcpp::List update_h_c(double, int, arma::vec, arma::vec, arma::mat, arma::vec, int)': mmvbvs.cpp:390:18: warning: unnecessary parentheses in declaration of 'rr' [-Wparentheses] 390 | NumericVector(rr) = runif(1, -0.05, 0.05); | ^~~~ mmvbvs.cpp:390:18: note: remove parentheses 390 | NumericVector(rr) = runif(1, -0.05, 0.05); | ^~~~ | - - mmvbvs.cpp:399:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 399 | for (int j=0; j < ind.size(); ++j){ | ~~^~~~~~~~~~~~ mmvbvs.cpp: In function 'Rcpp::List mmvbvs(arma::vec, arma::mat, Rcpp::List, arma::mat, arma::rowvec, int, int, int, int, int, double, bool)': mmvbvs.cpp:505:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 505 | if(!arma::is_finite(outsb1(i))){ | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:518: D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o MMVBVS.dll tmp.def RcppExports.o mmvbvs.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR make[1]: Leaving directory '/d/temp/2025_09_29_01_50_00_31777/RtmpyGulSs/R.INSTALL20ad067805e1a/MMVBVS/src' make[1]: Entering directory '/d/temp/2025_09_29_01_50_00_31777/RtmpyGulSs/R.INSTALL20ad067805e1a/MMVBVS/src' make[1]: Leaving directory '/d/temp/2025_09_29_01_50_00_31777/RtmpyGulSs/R.INSTALL20ad067805e1a/MMVBVS/src' installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-MMVBVS/00new/MMVBVS/libs/x64 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'MMVBVS' as MMVBVS_0.8.0.zip * DONE (MMVBVS)