* installing *source* package 'MMVBVS' ...
** this is package 'MMVBVS' version '0.8.0'
** package 'MMVBVS' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/RtmpcraQc6/R.INSTALLd570773c1f4e/MMVBVS/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mmvbvs.cpp -o mmvbvs.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from mmvbvs.cpp:1:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
mmvbvs.cpp: In function 'arma::mat em_with_zero_mean_c(arma::mat, int)':
mmvbvs.cpp:107:40: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
107 | if (0 < ind.size() && ind.size() < p){
| ~~~~~~~~~~~^~~
mmvbvs.cpp: In function 'Rcpp::List update_h_c(double, int, arma::vec, arma::vec, arma::mat, arma::vec, int)':
mmvbvs.cpp:390:18: warning: unnecessary parentheses in declaration of 'rr' [-Wparentheses]
390 | NumericVector(rr) = runif(1, -0.05, 0.05);
| ^~~~
mmvbvs.cpp:390:18: note: remove parentheses
390 | NumericVector(rr) = runif(1, -0.05, 0.05);
| ^~~~
| - -
mmvbvs.cpp:399:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
399 | for (int j=0; j < ind.size(); ++j){
| ~~^~~~~~~~~~~~
mmvbvs.cpp: In function 'Rcpp::List mmvbvs(arma::vec, arma::mat, Rcpp::List, arma::mat, arma::rowvec, int, int, int, int, int, double, bool)':
mmvbvs.cpp:505:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
505 | if(!arma::is_finite(outsb1(i))){
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o MMVBVS.dll tmp.def RcppExports.o mmvbvs.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/RtmpcraQc6/R.INSTALLd570773c1f4e/MMVBVS/src'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/RtmpcraQc6/R.INSTALLd570773c1f4e/MMVBVS/src'
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/RtmpcraQc6/R.INSTALLd570773c1f4e/MMVBVS/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-MMVBVS/00new/MMVBVS/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MMVBVS' as MMVBVS_0.8.0.zip
* DONE (MMVBVS)