* installing *source* package 'MAGEE' ...
** package 'MAGEE' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/RtmpELVauq/R.INSTALLf31061d3e80/MAGEE/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fitglmm.cpp -o fitglmm.o
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
                 from fitglmm.cpp:27:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fitmagee.cpp -o fitmagee.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_bgen.cpp -o read_bgen.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/arm/cpu_features.c -o libdeflate/lib/arm/cpu_features.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/x86/cpu_features.c -o libdeflate/lib/x86/cpu_features.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/adler32.c -o libdeflate/lib/adler32.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/crc32.c -o libdeflate/lib/crc32.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/deflate_compress.c -o libdeflate/lib/deflate_compress.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/deflate_decompress.c -o libdeflate/lib/deflate_decompress.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/gzip_compress.c -o libdeflate/lib/gzip_compress.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/gzip_decompress.c -o libdeflate/lib/gzip_decompress.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/utils.c -o libdeflate/lib/utils.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/zlib_compress.c -o libdeflate/lib/zlib_compress.o
gcc  -I"D:/RCompile/recent/R-4.3.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/zlib_decompress.c -o libdeflate/lib/zlib_decompress.o
g++ -std=gnu++17 -shared -s -static-libgcc -o MAGEE.dll tmp.def fitglmm.o fitmagee.o read_bgen.o registerDynamicSymbol.o -LD:/RCompile/recent/R-4.3.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -lz -lbz2 -lzstd libdeflate/lib/arm/cpu_features.o libdeflate/lib/x86/cpu_features.o libdeflate/lib/adler32.o libdeflate/lib/crc32.o libdeflate/lib/deflate_compress.o libdeflate/lib/deflate_decompress.o libdeflate/lib/gzip_compress.o libdeflate/lib/gzip_decompress.o libdeflate/lib/utils.o libdeflate/lib/zlib_compress.o libdeflate/lib/zlib_decompress.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpELVauq/R.INSTALLf31061d3e80/MAGEE/src'
make[1]: Entering directory '/d/temp/RtmpELVauq/R.INSTALLf31061d3e80/MAGEE/src'
make[1]: Leaving directory '/d/temp/RtmpELVauq/R.INSTALLf31061d3e80/MAGEE/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-MAGEE/00new/MAGEE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MAGEE' as MAGEE_1.3.2.zip
* DONE (MAGEE)