* installing *source* package 'HMMEsolver' ...
** package 'HMMEsolver' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
using C++11
make[1]: Entering directory '/d/temp/Rtmpwt9qtj/R.INSTALLdbf41edf33d9/HMMEsolver/src'
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Dist.cpp -o Dist.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Dist2.cpp -o Dist2.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FuncLib.cpp -o FuncLib.o
FuncLib.cpp: In function 'arma::mat GetXWs(arma::mat, double*, double*)':
FuncLib.cpp:34:7: warning: unused variable 'nInd' [-Wunused-variable]
34 | int nInd = 0;
| ^~~~
FuncLib.cpp: In function 'arma::mat GetZWX(arma::mat, double*, int, int)':
FuncLib.cpp:77:7: warning: unused variable 'nInd' [-Wunused-variable]
77 | int nInd = 0;
| ^~~~
FuncLib.cpp: In function 'bool CppGetDiag(double*, double*, double*, double*, double*, int*, int*, int*)':
FuncLib.cpp:115:7: warning: unused variable 'nm' [-Wunused-variable]
115 | int nm = n*m;
| ^~
FuncLib.cpp:128:11: warning: variable 'eta' set but not used [-Wunused-but-set-variable]
128 | double* eta = &dummys;
| ^~~
FuncLib.cpp:129:11: warning: variable 'deta_dmu' set but not used [-Wunused-but-set-variable]
129 | double* deta_dmu = &dummydet ;
| ^~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HMMEsolver_init.c -o HMMEsolver_init.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MainLib.cpp -o MainLib.o
MainLib.cpp: In function 'void SolveHMM(double*, double*, double*, double*, double*, int*, int*, int*)':
MainLib.cpp:15:8: warning: variable 'Result' set but not used [-Wunused-but-set-variable]
15 | bool Result;
| ^~~~~~
g++ -shared -s -static-libgcc -o HMMEsolver.dll tmp.def Dist.o Dist2.o FuncLib.o HMMEsolver_init.o MainLib.o -fopenmp -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/Rtmpwt9qtj/R.INSTALLdbf41edf33d9/HMMEsolver/src'
make[1]: Entering directory '/d/temp/Rtmpwt9qtj/R.INSTALLdbf41edf33d9/HMMEsolver/src'
make[1]: Leaving directory '/d/temp/Rtmpwt9qtj/R.INSTALLdbf41edf33d9/HMMEsolver/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-HMMEsolver/00new/HMMEsolver/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'HMMEsolver' as HMMEsolver_0.1.2.zip
* DONE (HMMEsolver)