- using R version 4.5.1 (2025-06-13 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'FME/DESCRIPTION' ... OK
- this is package 'FME' version '1.3.6.4'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'FME' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 14.2.0'
- used Fortran compiler: 'GNU Fortran (GCC) 14.2.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [12s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [1182m] ERROR
Error(s) in re-building vignettes:
--- re-building 'FME.Rnw' using Sweave
Loading required package: deSolve
Loading required package: rootSolve
Loading required package: coda
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
--- finished re-building 'FME.Rnw'
--- re-building 'FMEdyna.Rnw' using Sweave
Loading required package: deSolve
Loading required package: rootSolve
Loading required package: coda
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
--- finished re-building 'FMEdyna.Rnw'
--- re-building 'FMEmcmc.Rnw' using Sweave
Loading required package: deSolve
Loading required package: rootSolve
Loading required package: coda
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "FMEmcmc.tex" --max-iterations=20' had status 1
Error: processing vignette 'FMEmcmc.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'FMEmcmc.pdf' for vignette with name 'FMEmcmc' and engine 'utils::Sweave'. The following files exist in working directory 'D:\RCompile\CRANpkg\local\4.5\FME.Rcheck\vign_test\FME\vignettes': 'FME-HIV.pdf' (320096 bytes), 'FME-collfig.pdf' (4702 bytes), 'FME-costfig.pdf' (4389 bytes), 'FME-crlfig.pdf' (186065 bytes), 'FME-fitfig.pdf' (8507 bytes), 'FME-mcmcfig.pdf' (209908 bytes), 'FME-mcmcfig2.pdf' (475189 bytes), 'FME-odefig.pdf' (9204 bytes), 'FME-sf.pdf' (5744 bytes), 'FME-sfunfig.pdf' (6458 bytes), 'FME-sfunpfig.pdf' (46620 bytes), 'FME-srfig.pdf' (8615 bytes), 'FME.Rnw' (53557 bytes), 'FME.aux' (8616 bytes), 'FME.bbl' (10166 bytes), 'FME.blg' (1114 bytes), 'FME.log' (28469 bytes), 'FME.out' (2302 bytes), 'FME.pdf' (1.8909e+06 bytes), 'FME.tex' (58040 bytes), 'FMEdyna-collfig.pdf' (4538 bytes), 'FMEdyna-crl2fig.pdf' (31312 bytes), 'FMEdyna-crlfig.pdf' (16547 bytes), 'FMEdyna-cumuplot.pdf' (25373 bytes), 'FMEdyna-distfig.pdf' (73887 bytes), 'FMEdyna-fitfig.pdf' (6223 bytes), 'FMEdyna-mcmcfig.pdf' (38506 bytes), 'FMEdyna-mcmcfig2.pdf' (27643 bytes), 'FMEdyna-odefig.pdf' (6086 bytes), 'FMEdyna-pairsfig.pdf' (59941 bytes), 'FMEdyna-resfig.pdf' (4443 bytes), 'FMEdyna-sensfig.pdf' (13388 bytes), 'FMEdyna-sensfig2.pdf' (7351 bytes), 'FMEdyna-sfunfig.pdf' (6674 bytes), 'FMEdyna.Rnw' (27531 bytes), 'FMEdyna.aux' (5932 bytes), 'FMEdyna.bbl' (3748 bytes), 'FMEdyna.blg' (1104 bytes), 'FMEdyna.log' (33296 bytes), 'FMEdyna.out' (2951 bytes), 'FMEdyna.pdf' (789236 bytes), 'FMEdyna.tex' (40784 bytes), 'FMEmcmc-ABMCMC.pdf' (78384 bytes), 'FMEmcmc-ABMCMC2.pdf' (64407 bytes), 'FMEmcmc-ABMCMC3.pdf' (51144 bytes), 'FMEmcmc-Monmcmc.pdf' (35618 bytes), 'FMEmcmc-Monmcmc2.pdf' (28253 bytes), 'FMEmcmc-banana2.pdf' (186536 bytes), 'FMEmcmc-hist.pdf' (7843 bytes), 'FMEmcmc-hist1.pdf' (21661 bytes), 'FMEmcmc-logp.pdf' (41797 bytes), 'FMEmcmc-logp1.pdf' (42794 bytes), 'FMEmcmc-obs.pdf' (7438 bytes), 'FMEmcmc-sr.pdf' (6644 bytes), 'FMEmcmc.Rnw' (25317 bytes), 'FMEmcmc.tex' (33202 bytes), 'FMEother.Rnw' (9798 bytes), 'FMEsteady.Rnw' (12465 bytes), 'Rplots.pdf' (630784 bytes), 'mcmc.Rdata' (89187 bytes), 'vignettes.bib' (12810 bytes)
--- failed re-building 'FMEmcmc.Rnw'
--- re-building 'FMEother.Rnw' using Sweave
Loading required package: deSolve
Loading required package: rootSolve
Loading required package: coda
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
--- finished re-building 'FMEother.Rnw'
--- re-building 'FMEsteady.Rnw' using Sweave
Loading required package: deSolve
Loading required package: rootSolve
Loading required package: coda
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
Warning in par(usr) : argument 1 does not name a graphical parameter
--- finished re-building 'FMEsteady.Rnw'
SUMMARY: processing the following file failed:
'FMEmcmc.Rnw'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [14s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 1 ERROR