- using R version 4.5.1 (2025-06-13 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'CRTspat/DESCRIPTION' ... OK
- this is package 'CRTspat' version '1.3.2'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'CRTspat' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [14s] ERROR
Running examples in 'CRTspat-Ex.R' failed
The error most likely occurred in:
> ### Name: compute_mesh
> ### Title: Create INLA mesh for spatial analysis
> ### Aliases: compute_mesh
>
> ### ** Examples
>
> {
+ # low resolution mesh for test dataset
+ library(Matrix)
+ library(sp)
+ example <- readdata('exampleCRT.txt')
+ exampleMesh=compute_mesh(example, pixel = 0.5)
+ }
Error: object 'fm_identical_CRS' is not exported by 'namespace:fmesher'
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [26s] ERROR
Running 'testthat.R' [26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(CRTspat)
> extdata <- system.file("extdata",package = 'CRTspat')
> test_check("CRTspat")
(Intercept) armintervention
-0.5172565 -0.7004896
(Intercept) armintervention
-0.9848534 -0.4920953
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 7 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test9.R:35:3'): Analysis using INLA option gives expected DIC ───────
Error: object 'fm_identical_CRS' is not exported by 'namespace:fmesher'
Backtrace:
▆
1. ├─testthat::expect_equal(get_test9(), 1303) at test9.R:35:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─CRTspat (local) get_test9()
5. │ └─CRTspat::CRTanalysis(...) at test9.R:26:5
6. │ └─CRTspat:::INLAanalysis(analysis, requireMesh = requireMesh, inla_mesh = inla_mesh)
7. └─base::loadNamespace(x)
8. └─base::namespaceImportFrom(...)
9. └─base::importIntoEnv(impenv, impnames, ns, impvars)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 7 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [15s] OK
- checking PDF version of manual ... [21s] OK
- checking HTML version of manual ... [5s] OK
- DONE
Status: 2 ERRORs