* installing *source* package 'BoltzMM' ...
** this is package 'BoltzMM' version '0.1.5'
** package 'BoltzMM' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_07_28_01_50_00_16833/RtmpUTyLTW/R.INSTALL1199c7dc25190/BoltzMM/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BoltzMM.cpp -o BoltzMM.o
BoltzMM.cpp:10:9: warning: "NDEBUG" redefined
10 | #define NDEBUG
| ^~~~~~
<command-line>: note: this is the location of the previous definition
BoltzMM.cpp: In function 'double log_pl_calc(arma::mat, Rcpp::List)':
BoltzMM.cpp:68:10: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
68 | if(p+q != data.n_cols){
| ~~~~^~~~~~~~~~~~~~
BoltzMM.cpp: In function 'double pfvbm(arma::vec, arma::vec, arma::mat)':
BoltzMM.cpp:159:19: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
159 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~~
BoltzMM.cpp:159:38: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
159 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:159:56: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
159 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function 'arma::rowvec allpfvbm(arma::vec, arma::mat)':
BoltzMM.cpp:193:19: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
193 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:193:37: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
193 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function 'arma::mat rfvbm(int, arma::vec, arma::mat)':
BoltzMM.cpp:228:17: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
228 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:228:35: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
228 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function 'Rcpp::List fitfvbm(arma::mat, arma::vec, arma::mat, double, int)':
BoltzMM.cpp:270:19: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
270 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:270:37: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
270 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:270:56: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
270 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~~^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -s -static-libgcc -o BoltzMM.dll tmp.def BoltzMM.o RcppExports.o -fopenmp -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_07_28_01_50_00_16833/RtmpUTyLTW/R.INSTALL1199c7dc25190/BoltzMM/src'
make[1]: Entering directory '/d/temp/2025_07_28_01_50_00_16833/RtmpUTyLTW/R.INSTALL1199c7dc25190/BoltzMM/src'
make[1]: Leaving directory '/d/temp/2025_07_28_01_50_00_16833/RtmpUTyLTW/R.INSTALL1199c7dc25190/BoltzMM/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-BoltzMM/00new/BoltzMM/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BoltzMM' as BoltzMM_0.1.5.zip
* DONE (BoltzMM)