• using R version 4.6.1 (2026-06-24 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-09-29 16:46:36 UTC
• checking for file 'BayesBrainMap/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'BayesBrainMap' version '0.2.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'BayesBrainMap' can be installed ... WARNING Found the following significant warnings:   Note: possible error in 'dual_reg(BOLD, prior$mean, ': argument 4 matches multiple formal arguments See the install log for details. Information on the location(s) of code generating the 'Note's can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to 'yes'.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s] NOTE fit_BBM: warning in dual_reg(BOLD, prior$mean, GSR = FALSE, scale =   FALSE, hpf = 0): partial argument match of 'scale' to 'scale_by' fit_BBM: possible error in dual_reg(BOLD, prior$mean, GSR = FALSE,   scale = FALSE, hpf = 0): argument 4 matches multiple formal arguments
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [2s] ERROR Running examples in 'BayesBrainMap-Ex.R' failed The error most likely occurred in: > ### Name: estimate_prior > ### Title: Estimate prior > ### Aliases: estimate_prior estimate_prior.cifti estimate_prior.gifti > ### estimate_prior.nifti > > ### ** Examples > > nT <- 21 > nV <- 140 > nQ <- 6 > mU <- matrix(rnorm(nV*nQ), nrow=nV) > mS <- mU %*% diag(seq(nQ, 1)) %*% matrix(rnorm(nQ*nT), nrow=nQ) > BOLD <- list(B1=mS, B2=mS, B3=mS) > BOLD <- lapply(BOLD, function(x){x + rnorm(nV*nT, sd=.05)}) > template <- mU > estimate_prior(BOLD=BOLD, template=mU, FC_nSamp=2000, usePar=FALSE) Setting `scale_sm_FWHM == 0`. Data input format: numeric matrix Image dimensions: 140 Initial in-mask locations: 140 Number of networks: 6 Number of training subjects: 3 Number of covariates: 0 Including Cholesky-based FC prior with 2000 samples (100 random pivots x 20 samples per pivot). Subject 1 of 3.  Reading in data...  Dual regression... Error in fMRItools::dual_reg(GICA = template, ...) :   argument 3 matches multiple formal arguments  Subject 1 was skipped (error). Error in fMRItools::dual_reg(GICA = template, ...) :   argument 3 matches multiple formal arguments Error in estimate_prior(BOLD = BOLD, template = mU, FC_nSamp = 2000, usePar = FALSE) :   Error on first subject. Check data? Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [6s] OK   Running 'run_BayesBrainMap_tests.R' [4s]   Running 'testthat.R' [2s]
• checking PDF version of manual ... [24s] OK
• checking HTML version of manual ... [19s] OK
• DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE