• using R version 3.4.0 (2017-04-21)
• using platform: x86_64-apple-darwin15.6.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘nlme/DESCRIPTION’ ... OK
• this is package ‘nlme’ version ‘3.1-131’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘nlme’ can be installed ... [27s/50s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [43s/55s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [63s/74s] OK
    Running ‘anova.gls.R’ [1s/2s]
    Running ‘augPred_lab.R’ [23s/28s]
    Running ‘augPredmissing.R’ [1s/1s]
    Running ‘coef.R’ [1s/1s]
    Comparing ‘coef.Rout’ to ‘coef.Rout.save’ ... OK
    Running ‘contrMat.R’ [1s/1s]
    Running ‘data.frame.R’ [0s/1s]
    Running ‘deparse.R’ [1s/1s]
    Running ‘deviance.R’ [1s/1s]
    Running ‘fitted.R’ [1s/1s]
    Running ‘getData.R’ [1s/1s]
    Running ‘gls.R’ [1s/1s]
    Running ‘lmList.R’ [1s/1s]
    Running ‘lme.R’ [6s/7s]
    Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK
    Running ‘missing.R’ [1s/1s]
    Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ... OK
    Running ‘nlme.R’ [2s/2s]
    Running ‘nlme2.R’ [2s/2s]
    Running ‘predict.lme.R’ [1s/1s]
    Running ‘sigma-fixed-etc.R’ [19s/19s]
    Running ‘updateLme.R’ [1s/1s]
    Running ‘varIdent.R’ [1s/1s]
• checking PDF version of manual ... OK
• DONE
  Status: OK