- using R version 3.6.0 (2019-04-26)
- using platform: x86_64-apple-darwin15.6.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘Seurat/DESCRIPTION’ ... OK
- this is package ‘Seurat’ version ‘3.1.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Packages suggested but not available for checking:
'loomR', 'SingleCellExperiment', 'MAST', 'monocle'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Seurat’ can be installed ... [101s/101s] OK
- checking installed package size ... NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
libs 7.7Mb
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [37s/37s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘loomR’
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... [22s/22s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [31s/31s] OK
Running ‘testthat.R’ [31s/31s]
- checking PDF version of manual ... OK
- DONE
Status: 3 NOTEs