• using R version 4.0.0 (2020-04-24)
• using platform: x86_64-apple-darwin17.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘SanzCircos/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SanzCircos’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SanzCircos’ can be installed ... [6s/9s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... NOTE
  Namespaces in Imports field not imported from:
    ‘purrr’ ‘tidyr’
    All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/5s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... ERROR
  Running examples in ‘SanzCircos-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: make_circos_links
  > ### Title: make_circos_links
  > ### Aliases: make_circos_links
  >
  > ### ** Examples
  >
  >
  > links_df <- data.frame(chrom = c(rep("chr1", 5), rep("chr2", 5)),
  + band = c(rep("band1", 3), rep("band2", 2), "band1", rep("band2", 4)),
  + link = c(1, 2, 3, 1, 2, 1, 1, 3, 4, 5),
  + start = c(1, 3, 5, 10, 35, 1, 5, 8, 13, 15),
  + end = c(3, 5, 10, 35, 39, 5, 8, 13, 15, 21))
  >
  > links <- make_circos_links(links_df, "chrom", "band", "link", "start", "end", status = TRUE)
  Warning: `as.tibble()` is deprecated as of tibble 2.0.0.
  Please use `as_tibble()` instead.
  The signature and semantics have changed, see `?as_tibble`.
  This warning is displayed once every 8 hours.
  Call `lifecycle::last_warnings()` to see where this warning was generated.
  Error: Assigned data `as.character(df[[chromosome_grouping]][i])` must be compatible with existing data.
  ℹ Error occurred for column `V2`.
  ✖ Lossy cast from `value` <character> to `x` <logical>.
  * Locations: 1.
  Backtrace:
       █
    1. └─SanzCircos::make_circos_links(...)
    2. ├─dplyr::bind_rows(...)
    3. │ ├─dplyr:::flatten_bindable(dots_values(...))
    4. │ └─rlang::dots_values(...)
    5. └─pbapply::pblapply(...)
    6. └─base::lapply(X, FUN, ...)
    7. └─SanzCircos:::FUN(X[[i]], ...)
    8. ├─base::`[<-`(`*tmp*`, 1, 2, value = "chr1")
    9. └─tibble:::`[<-.tbl_df`(`*tmp*`, 1, 2, value = "chr1")
   10. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
   11. └─tibble:::tbl_subassign_row(xj, i, value, value_arg)
   12. └─base::tryCatch(...)
   13. └─base:::tryCatchList(expr, classes, parentenv, handlers)
   14. └
  Execution halted
• checking PDF version of manual ... OK
• DONE
  Status: 1 ERROR, 1 NOTE