• using R version 3.6.0 beta (2019-04-15 r76395)
• using platform: x86_64-apple-darwin15.6.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘ClinReport/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ClinReport’ version ‘0.9.1.12’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ClinReport’ can be installed ... [8s/15s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... NOTE
  Namespaces in Imports field not imported from:
    ‘emmeans’ ‘utils’
    All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/16s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [14s/25s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... NONE
• checking re-building of vignette outputs ... [25s/48s] WARNING
  Error(s) in re-building vignettes:
  --- re-building ‘clinreport_graphics.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:ClinReport':
  
      desc
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  
  Attaching package: 'nlme'
  
  The following object is masked from 'package:dplyr':
  
      collapse
  
  Loading required package: carData
  
  Attaching package: 'car'
  
  The following object is masked from 'package:dplyr':
  
      recode
  
  --- finished re-building ‘clinreport_graphics.Rmd’
  
  --- re-building ‘clinreport_modify_outputs.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:ClinReport':
  
      desc
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  
  Attaching package: 'nlme'
  
  The following object is masked from 'package:dplyr':
  
      collapse
  
  Loading required package: carData
  
  Attaching package: 'car'
  
  The following object is masked from 'package:dplyr':
  
      recode
  
  Quitting from lines 60-71 (clinreport_modify_outputs.Rmd)
  Error: processing vignette 'clinreport_modify_outputs.Rmd' failed with diagnostics:
  `render_flextable` needs to be used as a renderer for a knitr/rmarkdown R code chunk (render by rmarkdown)
  --- failed re-building ‘clinreport_modify_outputs.Rmd’
  
  --- re-building ‘clinreport_vignette_get_started.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:ClinReport':
  
      desc
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  
  Attaching package: 'nlme'
  
  The following object is masked from 'package:dplyr':
  
      collapse
  
  Loading required package: carData
  
  Attaching package: 'car'
  
  The following object is masked from 'package:dplyr':
  
      recode
  
  Quitting from lines 82-84 (clinreport_vignette_get_started.Rmd)
  Error: processing vignette 'clinreport_vignette_get_started.Rmd' failed with diagnostics:
  `render_flextable` needs to be used as a renderer for a knitr/rmarkdown R code chunk (render by rmarkdown)
  --- failed re-building ‘clinreport_vignette_get_started.Rmd’
  
  SUMMARY: processing the following files failed:
    ‘clinreport_modify_outputs.Rmd’ ‘clinreport_vignette_get_started.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• DONE
  Status: 1 WARNING, 1 NOTE