* installing *source* package ‘zoomerjoin’ ...
** package ‘zoomerjoin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
rm -Rf zoomerjoin.so ./rust/target/release/libzoomerjoin.a entrypoint.o /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/vendor
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo && \
cp rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo; \
fi && \
export PATH="/opt/gfortran/bin:/opt/R/x86_64/bin:/Library/TeX/texbin:/usr/texbin:/opt/R/x86_64/gfortran/bin:/usr/local/bin:/usr/local/gfortran/bin:/usr/local/teTeX/bin/x86_64-apple-darwin-current:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
echo `cargo --version` && echo `rustc --version`;
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling autocfg v1.1.0
Compiling cfg-if v1.0.0
Compiling libc v0.2.151
Compiling libm v0.2.8
Compiling scopeguard v1.2.0
Compiling crossbeam-utils v0.8.16
Compiling rayon-core v1.12.0
Compiling proc-macro2 v1.0.70
Compiling either v1.9.0
Compiling memoffset v0.9.0
Compiling num-traits v0.2.17
Compiling crossbeam-epoch v0.9.15
Compiling matrixmultiply v0.3.8
Compiling num-integer v0.1.45
Compiling getrandom v0.2.11
Compiling unicode-ident v1.0.12
Compiling rand_core v0.6.4
Compiling crossbeam-deque v0.8.3
Compiling ppv-lite86 v0.2.17
Compiling rawpointer v0.2.1
Compiling libR-sys v0.6.0
Compiling rand_chacha v0.3.1
Compiling quote v1.0.33
Compiling rayon v1.8.0
Compiling lock_api v0.4.11
Compiling parking_lot_core v0.9.9
Compiling paste v1.0.14
Compiling num-complex v0.4.4
Compiling rand v0.8.5
Compiling syn v2.0.41
Compiling extendr-api v0.6.0
Compiling smallvec v1.11.2
Compiling once_cell v1.19.0
Compiling rand_distr v0.4.3
Compiling hashbrown v0.14.3
Compiling itertools v0.10.5
Compiling nohash-hasher v0.2.0
Compiling rustc-hash v1.1.0
Compiling ndarray v0.15.6
Compiling dashmap v5.5.3
Compiling extendr-macros v0.6.0
Compiling ndarray-rand v0.14.0
Compiling zoomerjoin v0.1.0 (/Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/rust)
Finished release [optimized] target(s) in 45.81s
cargo 1.70.0 (ec8a8a0ca 2023-04-25)
rustc 1.70.0 (90c541806 2023-05-31)
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00_pkg_src/zoomerjoin/src/vendor ./rust/target/release/build; \
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o zoomerjoin.so entrypoint.o -L./rust/target/release -lzoomerjoin -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/zoomerjoin.Rcheck/00LOCK-zoomerjoin/00new/zoomerjoin/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zoomerjoin)