- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘vegclust/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘vegclust’ version ‘2.0.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘vegclust’ can be installed ... [7s/7s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/9s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) as.vegclust.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.vegclust.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?
22 | For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.
| ^
checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?
22 | For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.
| ^
checkRd: (-1) incr.vegclust.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) incr.vegclust.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vegclust.Rd:47: Lost braces in \itemize; meant \describe ?
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [6s/6s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [20s/22s] OK
- checking PDF version of manual ... [7s/7s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '