Check results for 'stars'

using R version 4.2.0 (2022-04-22)
using platform: x86_64-apple-darwin17.0 (64-bit)
using session charset: UTF-8
checking for file ‘stars/DESCRIPTION’ ... OK
this is package ‘stars’ version ‘0.6-0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘starsdata’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘stars’ can be installed ... [8s/8s] OK
checking installed package size ... NOTE
  installed size is 6.2Mb
  sub-directories of 1Mb or more:
    doc 2.4Mb
    nc 1.7Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [11s/11s] OK
checking Rd files ... [1s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [4s/4s] ERROR
Running examples in ‘stars-Ex.R’ failed
The error most likely occurred in:

> ### Name: mdim
> ### Title: Read or write data using GDAL's multidimensional array API
> ### Aliases: mdim read_mdim write_mdim
>
> ### ** Examples
>
> set.seed(135)
> m = matrix(runif(10), 2, 5)
> names(dim(m)) = c("stations", "time")
> times = as.Date("2022-05-01") + 1:5
> pts = st_as_sfc(c("POINT(0 1)", "POINT(3 5)"))
> s = st_as_stars(list(Precipitation = m)) |>
+ st_set_dimensions(1, values = pts) |>
+ st_set_dimensions(2, values = times)
> nc = tempfile(fileext=".nc")
> if (compareVersion(sf_extSoftVersion()["GDAL"], "3.4.0") > -1) {
+ write_mdim(s, nc)
+ # try ncdump on the generated file
+ print(read_mdim(nc))
+ }
Error: cannot open driver
Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [11s/11s] ERROR
  Running ‘aggregate.R’ [2s/2s]
  Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
< Linking to GEOS 3.10.2, GDAL 3.4.2, PROJ 8.2.1; sf_use_s2() is TRUE
---
> Linking to GEOS 3.9.3, GDAL 3.5.2, PROJ 8.2.1; sf_use_s2() is TRUE
  Running ‘align.R’ [2s/2s]
  Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK
  Running ‘area.R’ [1s/1s]
  Comparing ‘area.Rout’ to ‘area.Rout.save’ ...51a52,64
> /PRODUCT/longitude,
> /PRODUCT/latitude,
> /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column,
> stars object with 2 dimensions and 1 attribute
> attribute(s):
> Min. 1st Qu. Median Mean 3rd Qu. Max.
> area [m^2] 64503163 64957713 65834712 65849060 66734597 67218777
> dimension(s):
> from to refsys values x/y
> x 1 5 WGS 84 [5x5] -5.81066 [°],...,-5.26234 [°] [x]
> y 1 5 WGS 84 [5x5] 44.4439 [°],...,44.8693 [°] [y]
> curvilinear grid
> There were 15 warnings (use warnings() to see them)
  Running ‘crop.R’ [2s/2s]
  Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
  Running ‘curvilinear.R’ [1s/1s]
  Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ...54a55,70
> /PRODUCT/longitude,
> /PRODUCT/latitude,
> /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column,
> stars object with 3 dimensions and 1 attribute
> attribute(s):
> Min. 1st Qu. Median
> nitrogendioxide_summed_total_c... 3.650813e-05 7.451281e-05 8.296968e-05
> Mean 3rd Qu. Max. NA's
> nitrogendioxide_summed_total_c... 8.581399e-05 9.397442e-05 0.0004535302 330
> dimension(s):
> from to refsys values x/y
> x 1 450 WGS 84 [450x278] -5.81066 [°],...,30.9468 [°] [x]
> y 1 278 WGS 84 [450x278] 28.3605 [°],...,51.4686 [°] [y]
> time 1 1 NA NULL
> curvilinear grid
> There were 15 warnings (use warnings() to see them)
  Running ‘datasets.R’ [1s/1s]
  Comparing ‘datasets.Rout’ to ‘datasets.Rout.save’ ...29a30,38
> stars_proxy object with 1 attribute in 1 file(s):
> $`MTD_MSIL1C.xml:10m:EPSG_32632`
> [1] "[...]/MTD_MSIL1C.xml:10m:EPSG_32632"
>
> dimension(s):
> from to offset delta refsys values x/y
> x 1 10980 3e+05 10 WGS 84 / UTM zone 32N NULL [x]
> y 1 10980 6e+06 -10 WGS 84 / UTM zone 32N NULL [y]
> band 1 4 NA NA NA B4,...,B8
  Running ‘dimensions.R’ [1s/1s]
Running the tests in ‘tests/dimensions.R’ failed.
Complete output:
  > # https://github.com/r-spatial/stars/issues/295
  > suppressPackageStartupMessages(library(stars))
  > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars"))
  trying to read file: /Volumes/Builds/packages/high-sierra-x86_64/results/4.2/stars.Rcheck/stars/nc/bcsd_obs_1999.nc
  Error: file not found
  Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [3s/3s] NONE
  ‘stars1.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars2.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars3.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars4.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars5.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars6.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars7.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars8.Rmd’ using ‘UTF-8’... [0s/0s] OK
checking re-building of vignette outputs ... [30s/33s] OK
checking PDF version of manual ... OK
DONE
Status: 2 ERRORs, 2 NOTEs
using check arguments '--no-clean-on-error '