* installing *source* package ‘sspse’ ...
** this is package ‘sspse’ version ‘1.1.0-6’
** package ‘sspse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cmp.c -o cmp.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dis.c -o dis.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dpoilog.c -o dpoilog.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getinclC.c -o getinclC.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getinclCstacked.c -o getinclCstacked.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c likelihoodcmp.c -o likelihoodcmp.o
dis.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
dis.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
dis.c:30:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
dis.c:30:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
likelihoodcmp.c:33:10: warning: variable 'dkappa' set but not used [-Wunused-but-set-variable]
double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
^
likelihoodcmp.c:33:18: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
^
likelihoodcmp.c:33:36: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
^
likelihoodcmp.c:33:49: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
^
likelihoodcmp.c:271:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmup;
^
likelihoodcmp.c:277:18: warning: variable 'rkappa' set but not used [-Wunused-but-set-variable]
double dkappa, rkappa, ddf, dmu;
^
likelihoodcmp.c:277:26: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
double dkappa, rkappa, ddf, dmu;
^
likelihoodcmp.c:277:31: warning: variable 'dmu' set but not used [-Wunused-but-set-variable]
double dkappa, rkappa, ddf, dmu;
^
likelihoodcmp.c:278:18: warning: variable 'dsigma2' set but not used [-Wunused-but-set-variable]
double dsigma, dsigma2, dmuproposal, dsigmaproposal;
^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc.c -o mcmc.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmp.c -o posteriorcmp.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmp2.c -o posteriorcmp2.o
mcmc.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:30:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:30:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:25: warning: variable 'dmu0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:31: warning: variable 'dsigma0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:234:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
mcmc.c:342:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmup;
^
mcmc.c:348:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
double dkappa0, rkappa0, ddf0, dmu0, logK;
^
posteriorcmp.c:280:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmuptheta;
^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpdisease.c -o posteriorcmpdisease.o
posteriorcmp2.c:38:10: warning: variable 'ddfmu' set but not used [-Wunused-but-set-variable]
double ddfmu, ddfsigma, dnuproposal;
^
posteriorcmp2.c:38:17: warning: variable 'ddfsigma' set but not used [-Wunused-but-set-variable]
double ddfmu, ddfsigma, dnuproposal;
^
posteriorcmp2.c:38:27: warning: variable 'dnuproposal' set but not used [-Wunused-but-set-variable]
double ddfmu, ddfsigma, dnuproposal;
^
9 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpdisease_Ising.c -o posteriorcmpdisease_Ising.o
3 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpvis.c -o posteriorcmpvis.o
posteriorcmpdisease_Ising.c:564:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmuptheta;
^
posteriorcmpvis.c:526:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
double dmemnu, dmemnur;
^
12 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpvis2.c -o posteriorcmpvis2.o
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis.c -o posteriorcmpwpvis.o
posteriorcmpvis2.c:61:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable]
double temp, temp2, uprob1, uprob2;
^
posteriorcmpvis2.c:62:10: warning: unused variable 'rtprob' [-Wunused-variable]
double rtprob, lliki;
^
posteriorcmpvis2.c:625:16: warning: unused variable 'rtprob' [-Wunused-variable]
double temp, rtprob;
^
posteriorcmpvis2.c:636:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
double dmemnu, dmemnur;
^
posteriorcmpwpvis.c:58:10: warning: unused variable 'rtprob' [-Wunused-variable]
double rtprob, lliki;
^
posteriorcmpwpvis.c:491:16: warning: unused variable 'rtprob' [-Wunused-variable]
double temp, rtprob;
^
posteriorcmpwpvis.c:504:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
double dmemnu, dmemnur;
^
4 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis2.c -o posteriorcmpwpvis2.o
posteriorcmpwpvis2.c:64:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable]
double temp, temp2, uprob1, uprob2;
^
posteriorcmpwpvis2.c:702:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
double dmemnu, dmemnur;
^
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis_binomial.c -o posteriorcmpwpvis_binomial.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvisdisease.c -o posteriorcmpwpvisdisease.o
posteriorcmpwpvis_binomial.c:486:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
double dmemnu, dmemnur;
^
posteriorcmpwpvisdisease.c:56:10: warning: unused variable 'tau' [-Wunused-variable]
double tau, tau0, tau1, ptau;
^
posteriorcmpwpvisdisease.c:722:10: warning: unused variable 'taustar' [-Wunused-variable]
double taustar, ptaustar, ptau, taui, tau0i, tau1i;
^
posteriorcmpwpvisdisease.c:722:19: warning: unused variable 'ptaustar' [-Wunused-variable]
double taustar, ptaustar, ptau, taui, tau0i, tau1i;
^
posteriorcmpwpvisdisease.c:722:29: warning: unused variable 'ptau' [-Wunused-variable]
double taustar, ptaustar, ptau, taui, tau0i, tau1i;
^
posteriorcmpwpvisdisease.c:722:35: warning: unused variable 'taui' [-Wunused-variable]
double taustar, ptaustar, ptau, taui, tau0i, tau1i;
^
posteriorcmpwpvisdisease.c:723:21: warning: variable 'ptau1star' set but not used [-Wunused-but-set-variable]
double ptau0star, ptau1star, ptau0, ptau1;
^
posteriorcmpwpvisdisease.c:723:39: warning: unused variable 'ptau1' [-Wunused-variable]
double ptau0star, ptau1star, ptau0, ptau1;
^
posteriorcmpwpvisdisease.c:1014:10: warning: unused variable 'taustar' [-Wunused-variable]
double taustar, ptaustar, ptau, taui;
^
posteriorcmpwpvisdisease.c:1014:35: warning: unused variable 'taui' [-Wunused-variable]
double taustar, ptaustar, ptau, taui;
^
posteriorcmpwpvisdisease.c:1023:10: warning: unused variable 'tmp1' [-Wunused-variable]
double tmp1, tmp2;
^
posteriorcmpwpvisdisease.c:1023:16: warning: unused variable 'tmp2' [-Wunused-variable]
double tmp1, tmp2;
^
3 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriornbinom.c -o posteriornbinom.o
posteriornbinom.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriornbinom.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriornbinom.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriornbinom.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriornbinom.c:239:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmup;
^
posteriornbinom.c:245:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
double dkappa0, rkappa0, ddf0, dmu0, logK;
^
4 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorpln.c -o posteriorpln.o
posteriorpln.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriorpln.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriorpln.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriorpln.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
^
posteriorpln.c:248:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
int i, Ki, Ni, isamp, iinterval, isamplesize, iwarmup;
^
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorplndisease.c -o posteriorplndisease.o
posteriorplndisease.c:32:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
posteriorplndisease.c:32:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
posteriorplndisease.c:32:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
posteriorplndisease.c:32:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
^
6 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ppspolya.c -o ppspolya.o
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c size.c -o size.o
2 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c size.older.c -o size.older.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sizeall.c -o sizeall.o
size.c:102:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
double Nd, lcardN, Kd, Md, lM;
^
size.c:102:32: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
double Nd, lcardN, Kd, Md, lM;
^
size.c:226:12: warning: variable 'mhtn' set but not used [-Wunused-but-set-variable]
double mhtn;
^
size.c:228:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
double Nd, Kd, Md, lM;
^
size.c:228:16: warning: variable 'Kd' set but not used [-Wunused-but-set-variable]
double Nd, Kd, Md, lM;
^
size.c:228:24: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
double Nd, Kd, Md, lM;
^
size.older.c:155:16: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
double Md, lM;
^
size.older.c:222:20: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
double Nc, Md, lM;
^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sspse_init.c -o sspse_init.o
5 warnings generated.
2 warnings generated.
6 warnings generated.
4 warnings generated.
11 warnings generated.
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o sspse.so cmp.o dis.o dpoilog.o getinclC.o getinclCstacked.o likelihoodcmp.o mcmc.o posteriorcmp.o posteriorcmp2.o posteriorcmpdisease.o posteriorcmpdisease_Ising.o posteriorcmpvis.o posteriorcmpvis2.o posteriorcmpwpvis.o posteriorcmpwpvis2.o posteriorcmpwpvis_binomial.o posteriorcmpwpvisdisease.o posteriornbinom.o posteriorpln.o posteriorplndisease.o ppspolya.o size.o size.older.o sizeall.o sspse_init.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/sspse.Rcheck/00LOCK-sspse/00new/sspse/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sspse)