* installing *source* package ‘spopt’ ...
** this is package ‘spopt’ version ‘0.1.2’
** package ‘spopt’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.93.0 (083ac5135 2025-12-15)
Using rustc 1.93.0 (254b59607 2026-01-19)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
Warning in system2("xcrun", "--show-sdk-version", TRUE, TRUE) :
running command ''xcrun' --show-sdk-version 2>&1' had status 1
using SDK: ‘NA’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
if [ -d ./vendor ]; then \
echo "=== Using offline vendor directory ==="; \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo && \
cp rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo/config.toml; \
elif [ -f ./rust/vendor.tar.xz ]; then \
echo "=== Using offline vendor tarball ==="; \
tar xf rust/vendor.tar.xz && \
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo && \
cp rust/vendor-config.toml /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo/config.toml; \
fi
=== Using offline vendor tarball ===
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo && \
export PATH="/opt/R/x86_64/bin:/opt/gfortran/bin:/Applications/CMake.app/CMake.app/Contents/bin:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Locking 58 packages to latest compatible versions
Adding ndarray v0.16.1 (available: v0.17.1)
Compiling autocfg v1.5.0
Compiling libm v0.2.15
Compiling libc v0.2.178
Compiling proc-macro2 v1.0.104
Compiling crossbeam-utils v0.8.21
Compiling unicode-ident v1.0.22
Compiling quote v1.0.42
Compiling num-traits v0.2.19
Compiling matrixmultiply v0.3.10
Compiling crossbeam-epoch v0.9.18
Compiling zerocopy v0.8.31
Compiling rayon-core v1.13.0
Compiling rawpointer v0.2.1
Compiling paste v1.0.15
Compiling syn v2.0.111
Compiling crossbeam-deque v0.8.6
Compiling num-complex v0.2.4
Compiling cfg-if v1.0.4
Compiling bytemuck v1.24.0
Compiling extendr-ffi v0.8.1
Compiling safe_arch v0.7.4
Compiling num-complex v0.4.6
Compiling num-integer v0.1.46
Compiling getrandom v0.2.16
Compiling either v1.15.0
Compiling typenum v1.19.0
Compiling rayon v1.11.0
Compiling rand_core v0.6.4
Compiling wide v0.7.33
Compiling approx v0.3.2
Compiling approx v0.5.1
Compiling hashbrown v0.16.1
Compiling extendr-api v0.8.1
Compiling equivalent v1.0.2
Compiling ppv-lite86 v0.2.21
Compiling alga v0.9.3
Compiling rand_chacha v0.3.1
Compiling indexmap v2.12.1
Compiling ndarray v0.17.1
Compiling nalgebra-macros v0.2.2
Compiling simba v0.9.1
Compiling extendr-macros v0.8.1
Compiling num-rational v0.4.2
Compiling num_cpus v1.17.0
Compiling smallvec v1.15.1
Compiling fixedbitset v0.4.2
Compiling once_cell v1.21.3
Compiling petgraph v0.6.5
Compiling ndarray v0.16.1
Compiling rand v0.8.5
Compiling sprs v0.11.4
Compiling nalgebra v0.33.2
Compiling spopt v0.1.0 (/Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/rust)
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -liconv -lR -lSystem -lc -lm
Finished `release` profile [optimized] target(s) in 2m 51s
# Always clean up CARGOTMP
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo;
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o spopt.so entrypoint.o -L./rust/target/release -lspopt -F/Library/Frameworks/R.framework/.. -framework R
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/vendor ./rust/target
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00LOCK-spopt/00new/spopt/libs
** generating debug symbols (dSYM)
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/spopt.Rcheck/00_pkg_src/spopt/src/./rust/target/release/libspopt.a(spopt-e73d80840c93f2e4.spopt.9e81d72939cf3a9e-cgu.0.rcgu.o) unable to open object file: No such file or directory
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spopt)