Install log for 'sommer'

* installing *source* package ‘sommer’ ...
** this is package ‘sommer’ version ‘4.5.12’
** package ‘sommer’ successfully unpacked and MD5 sums checked
** using staged installation
configure: METIS not found - using Eigen's built-in AMD ordering (default).
configure: CUDA kernels disabled; CPU fitting remains available.
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MNR.cpp -o MNR.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ai_mme_sp2.cpp -o ai_mme_sp2.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_conditional.cpp -o mme_conditional.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_direct.cpp -o mme_direct.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_fixed_rank.cpp -o mme_fixed_rank.o
In file included from mme_conditional.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from mme_conditional.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from mme_conditional.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from mme_fixed_rank.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from mme_fixed_rank.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from mme_fixed_rank.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from mme_conditional.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from mme_fixed_rank.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from ai_mme_sp2.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from mme_direct.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from MNR.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from ai_mme_sp2.cpp:3:
In file included from ./mme_rr.h:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from ai_mme_sp2.cpp:3:
./mme_rr.h:1095:25: warning: unused variable 'last' [-Wunused-variable]
      const arma::uword last = offsets[term + 1] - 1;
                        ^
mme_direct.cpp:113:8: warning: unused variable 'intercept' [-Wunused-variable]
  bool intercept = hasIntercept;
       ^
MNR.cpp:796:10: warning: unused variable 'vary2' [-Wunused-variable]
  double vary2 = arma::mean(arma::var(arma::square(y0)));
         ^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_gpu.cpp -o mme_gpu.o
5 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_inference.cpp -o mme_inference.o
ai_mme_sp2.cpp:464:8: warning: unused variable 'intercept' [-Wunused-variable]
  bool intercept = hasIntercept;
       ^
In file included from mme_direct.cpp:1:
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
In file included from MNR.cpp:1:
./mme_sp2_support.h:611:29: warning: unused function 'readVarianceParameterMap' [-Wunused-function]
static VarianceParameterMap readVarianceParameterMap(const Rcpp::List & covStructI,
                            ^
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
./mme_sp2_support.h:659:13: warning: unused function 'find_intercept_vector' [-Wunused-function]
static bool find_intercept_vector(const arma::sp_mat & X, arma::vec & cOut) {
            ^
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mme_solve.cpp -o mme_solve.o
5 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c native_relationships.cpp -o native_relationships.o
In file included from mme_inference.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from mme_solve.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from native_relationships.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from mme_inference.cpp:1:
./mme_sp2_support.h:611:29: warning: unused function 'readVarianceParameterMap' [-Wunused-function]
static VarianceParameterMap readVarianceParameterMap(const Rcpp::List & covStructI,
                            ^
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
./mme_sp2_support.h:659:13: warning: unused function 'find_intercept_vector' [-Wunused-function]
static bool find_intercept_vector(const arma::sp_mat & X, arma::vec & cOut) {
            ^
In file included from mme_solve.cpp:1:
./mme_sp2_support.h:611:29: warning: unused function 'readVarianceParameterMap' [-Wunused-function]
static VarianceParameterMap readVarianceParameterMap(const Rcpp::List & covStructI,
                            ^
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
./mme_sp2_support.h:659:13: warning: unused function 'find_intercept_vector' [-Wunused-function]
static bool find_intercept_vector(const arma::sp_mat & X, arma::vec & cOut) {
            ^
In file included from native_relationships.cpp:1:
./mme_sp2_support.h:611:29: warning: unused function 'readVarianceParameterMap' [-Wunused-function]
static VarianceParameterMap readVarianceParameterMap(const Rcpp::List & covStructI,
                            ^
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
./mme_sp2_support.h:659:13: warning: unused function 'find_intercept_vector' [-Wunused-function]
static bool find_intercept_vector(const arma::sp_mat & X, arma::vec & cOut) {
            ^
4 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Matrix/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c native_utils.cpp -o native_utils.o
4 warnings generated.
In file included from native_utils.cpp:1:
In file included from ./mme_sp2_support.h:15:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
4 warnings generated.
In file included from native_utils.cpp:1:
./mme_sp2_support.h:611:29: warning: unused function 'readVarianceParameterMap' [-Wunused-function]
static VarianceParameterMap readVarianceParameterMap(const Rcpp::List & covStructI,
                            ^
./mme_sp2_support.h:631:18: warning: unused function 'projectVarianceParameters' [-Wunused-function]
static arma::vec projectVarianceParameters(const VarianceParameterMap & map,
                 ^
./mme_sp2_support.h:659:13: warning: unused function 'find_intercept_vector' [-Wunused-function]
static bool find_intercept_vector(const arma::sp_mat & X, arma::vec & cOut) {
            ^
4 warnings generated.
5 warnings generated.
3 warnings generated.
5 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o sommer.so MNR.o RcppExports.o ai_mme_sp2.o mme_conditional.o mme_direct.o mme_fixed_rank.o mme_gpu.o mme_inference.o mme_solve.o native_relationships.o native_utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/sommer.Rcheck/00LOCK-sommer/00new/sommer/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sommer)