Check results for 'shapr'

using R version 4.5.1 (2025-06-13)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘shapr/DESCRIPTION’ ... OK
this is package ‘shapr’ version ‘1.0.5’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘shapr’ can be installed ... [51s/38s] OK See the install log for details.
used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... INFO installed size is 8.6Mb sub-directories of 1Mb or more: doc 3.3Mb libs 4.1Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/1s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
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checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/1s] OK
checking whether startup messages can be suppressed ... [0s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [14s/22s] OK
checking Rd files ... [0s/1s] WARNING additional_regression_setup.Rd: Sections \title, and \name must exist and be unique in Rd files aicc_full_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files aicc_full_single_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files append_vS_list.Rd: Sections \title, and \name must exist and be unique in Rd files categorical_to_one_hot_layer.Rd: Sections \title, and \name must exist and be unique in Rd files check_categorical_valid_MCsamp.Rd: Sections \title, and \name must exist and be unique in Rd files check_convergence.Rd: Sections \title, and \name must exist and be unique in Rd files check_groups.Rd: Sections \title, and \name must exist and be unique in Rd files check_verbose.Rd: Sections \title, and \name must exist and be unique in Rd files cli_compute_vS.Rd: Sections \title, and \name must exist and be unique in Rd files cli_iter.Rd: Sections \title, and \name must exist and be unique in Rd files cli_startup.Rd: Sections \title, and \name must exist and be unique in Rd files cli_topline.Rd: Sections \title, and \name must exist and be unique in Rd files coalition_matrix_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device compute_estimates.Rd: Sections \title, and \name must exist and be unique in Rd files compute_shapley.Rd: Sections \title, and \name must exist and be unique in Rd files compute_time.Rd: Sections \title, and \name must exist and be unique in Rd files compute_vS.Rd: Sections \title, and \name must exist and be unique in Rd files convert_feature_name_to_idx.Rd: Sections \title, and \name must exist and be unique in Rd files correction_matrix_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device create_ctree.Rd: Sections \title, and \name must exist and be unique in Rd files create_marginal_data_cat.Rd: Sections \title, and \name must exist and be unique in Rd files create_marginal_data_gaussian.Rd: Sections \title, and \name must exist and be unique in Rd files create_marginal_data_training.Rd: Sections \title, and \name must exist and be unique in Rd files default_doc_export.Rd: Sections \title, and \name must exist and be unique in Rd files default_doc_internal.Rd: Sections \title, and \name must exist and be unique in Rd files exact_coalition_table.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device Error writing to connection: No space left on device finalize_explanation.Rd: Sections \title, and \name must exist and be unique in Rd files format_convergence_info.Rd: Sections \title, and \name must exist and be unique in Rd files format_info_basic.Rd: Sections \title, and \name must exist and be unique in Rd files Warning in for (i in seq_along(specs)) { : closing unused connection 6 () Warning in for (i in seq_along(specs)) { : closing unused connection 5 () Warning in for (i in seq_along(specs)) { : closing unused connection 4 () Warning in for (i in seq_along(specs)) { : closing unused connection 3 () format_info_extra.Rd: Sections \title, and \name must exist and be unique in Rd files format_round.Rd: Sections \title, and \name must exist and be unique in Rd files format_shapley_info.Rd: Sections \title, and \name must exist and be unique in Rd files gauss_cat_loss.Rd: Sections \title, and \name must exist and be unique in Rd files gauss_cat_parameters.Rd: Sections \title, and \name must exist and be unique in Rd files gauss_cat_sampler_most_likely.Rd: Sections \title, and \name must exist and be unique in Rd files gauss_cat_sampler_random.Rd: Sections \title, and \name must exist and be unique in Rd files gaussian_transform.Rd: Sections \title, and \name must exist and be unique in Rd files gaussian_transform_separate.Rd: Sections \title, and \name must exist and be unique in Rd files get_S_causal_steps.Rd: Sections \title, and \name must exist and be unique in Rd files get_cov_mat.Rd: Sections \title, and \name must exist and be unique in Rd files get_data_forecast.Rd: Sections \title, and \name must exist and be unique in Rd files get_data_specs.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device get_extra_parameters.Rd: Sections \title, and \name must exist and be unique in Rd files get_feature_specs.Rd: Sections \title, and \name must exist and be unique in Rd files get_iterative_args_default.Rd: Sections \title, and \name must exist and be unique in Rd files get_max_n_coalitions_causal.Rd: Sections \title, and \name must exist and be unique in Rd files get_model_specs.Rd: Sections \title, and \name must exist and be unique in Rd files get_mu_vec.Rd: Sections \title, and \name must exist and be unique in Rd files get_nice_time.Rd: Sections \title, and \name must exist and be unique in Rd files get_output_args_default.Rd: Sections \title, and \name must exist and be unique in Rd files get_predict_model.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device get_supported_approaches.Rd: Sections \title, and \name must exist and be unique in Rd files get_supported_models.Rd: Sections \title, and \name must exist and be unique in Rd files get_valid_causal_coalitions.Rd: Sections \title, and \name must exist and be unique in Rd files group_forecast_setup.Rd: Sections \title, and \name must exist and be unique in Rd files hat_matrix_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files inv_gaussian_transform_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files lag_data.Rd: Sections \title, and \name must exist and be unique in Rd files mahalanobis_distance_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files mcar_mask_generator.Rd: Sections \title, and \name must exist and be unique in Rd files memory_layer.Rd: Sections \title, and \name must exist and be unique in Rd files model_checker.Rd: Sections \title, and \name must exist and be unique in Rd files num_str.Rd: Sections \title, and \name must exist and be unique in Rd files observation_impute.Rd: Sections \title, and \name must exist and be unique in Rd files observation_impute_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files paired_sampler.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device Error writing to connection: No space left on device Error writing to connection: No space left on device Error writing to connection: No space left on device Error writing to connection: No space left on device Error writing to connection: No space left on device prepare_data.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_causal.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_copula_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_copula_cpp_caus.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_gaussian_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_gaussian_cpp_caus.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_data_single_coalition.Rd: Sections \title, and \name must exist and be unique in Rd files prepare_next_iteration.Rd: Sections \title, and \name must exist and be unique in Rd files print.shapr.Rd: Sections \title, and \name must exist and be unique in Rd files print_iter.Rd: Sections \title, and \name must exist and be unique in Rd files process_factor_data.Rd: Sections \title, and \name must exist and be unique in Rd files quantile_type7_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files reg_forecast_setup.Rd: Sections \title, and \name must exist and be unique in Rd files regression.check_namespaces.Rd: Sections \title, and \name must exist and be unique in Rd files regression.check_parameters.Rd: Sections \title, and \name must exist and be unique in Rd files regression.check_recipe_func.Rd: Sections \title, and \name must exist and be unique in Rd files regression.check_sur_n_comb.Rd: Sections \title, and \name must exist and be unique in Rd files regression.check_vfold_cv_para.Rd: Sections \title, and \name must exist and be unique in Rd files regression.cv_message.Rd: Sections \title, and \name must exist and be unique in Rd files regression.get_string_to_R.Rd: Sections \title, and \name must exist and be unique in Rd files Warning in for (block in blocks) { : closing unused connection 10 () Warning in for (block in blocks) { : closing unused connection 9 () Warning in for (block in blocks) { : closing unused connection 8 () Warning in for (block in blocks) { : closing unused connection 7 () Warning in for (block in blocks) { : closing unused connection 6 () Warning in for (block in blocks) { : closing unused connection 5 () Warning in for (block in blocks) { : closing unused connection 4 () Warning in for (block in blocks) { : closing unused connection 3 () round_manual.Rd: Sections \title, and \name must exist and be unique in Rd files rss_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device sample_coalitions_cpp_str_paired.Rd: Sections \title, and \name must exist and be unique in Rd files sample_combinations.Rd: Sections \title, and \name must exist and be unique in Rd files sample_ctree.Rd: Sections \title, and \name must exist and be unique in Rd files save_results.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device Error writing to connection: No space left on device shapley_setup.Rd: Sections \title, and \name must exist and be unique in Rd files shapley_weights.Rd: Sections \title, and \name must exist and be unique in Rd files shapr-package.Rd: Sections \title, and \name must exist and be unique in Rd files skip_connection.Rd: Sections \title, and \name must exist and be unique in Rd files specified_masks_mask_generator.Rd: Sections \title, and \name must exist and be unique in Rd files specified_prob_mask_generator.Rd: Sections \title, and \name must exist and be unique in Rd files summary.shapr.Rd: Sections \title, and \name must exist and be unique in Rd files test_predict_model.Rd: Sections \title, and \name must exist and be unique in Rd files testing_cleanup.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device vaeac_categorical_parse_params.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_activation_func.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_cuda.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_epoch_values.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_extra_named_list.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_logicals.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_mask_gen.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_masking_ratio.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device vaeac_check_positive_integers.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_positive_numerics.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_probabilities.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_save_names.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_save_parameters.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_which_vaeac_model.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_check_x_colnames.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_compute_normalization.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_dataset.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_extend_batch.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_current_save_state.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device vaeac_get_evaluation_criteria.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device vaeac_get_full_state_list.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_mask_generator_name.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_model_from_checkp.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_n_decimals.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_optimizer.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_save_file_names.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_val_iwae.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_get_x_explain_extended.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_impute_missing_entries.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_kl_normal_normal.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_normal_parse_params.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_normalize_data.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_postprocess_data.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_preprocess_data.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_print_train_summary.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_save_state.Rd: Sections \title, and \name must exist and be unique in Rd files Error writing to connection: No space left on device Error writing to connection: No space left on device vaeac_train_model_continue.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_update_para_locations.Rd: Sections \title, and \name must exist and be unique in Rd files vaeac_update_pretrained_model.Rd: Sections \title, and \name must exist and be unique in Rd files weight_matrix.Rd: Sections \title, and \name must exist and be unique in Rd files weight_matrix_cpp.Rd: Sections \title, and \name must exist and be unique in Rd files problems found in ‘additional_regression_setup.Rd’, ‘aicc_full_cpp.Rd’, ‘aicc_full_single_cpp.Rd’, ‘append_vS_list.Rd’, ‘categorical_to_one_hot_layer.Rd’, ‘check_categorical_valid_MCsamp.Rd’, ‘check_convergence.Rd’, ‘check_groups.Rd’, ‘check_verbose.Rd’, ‘cli_compute_vS.Rd’, ‘cli_iter.Rd’, ‘cli_startup.Rd’, ‘cli_topline.Rd’, ‘coalition_matrix_cpp.Rd’, ‘compute_MSEv_eval_crit.Rd’, ‘compute_estimates.Rd’, ‘compute_shapley.Rd’, ‘compute_time.Rd’, ‘compute_vS.Rd’, ‘convert_feature_name_to_idx.Rd’, ‘correction_matrix_cpp.Rd’, ‘create_coalition_table.Rd’, ‘create_ctree.Rd’, ‘create_marginal_data_cat.Rd’, ‘create_marginal_data_gaussian.Rd’, ‘create_marginal_data_training.Rd’, ‘default_doc_export.Rd’, ‘default_doc_internal.Rd’, ‘exact_coalition_table.Rd’, ‘explain.Rd’, ‘explain_forecast.Rd’, ‘finalize_explanation.Rd’, ‘format_convergence_info.Rd’, ‘format_info_basic.Rd’, ‘format_info_extra.Rd’, ‘format_round.Rd’, ‘format_shapley_info.Rd’, ‘gauss_cat_loss.Rd’, ‘gauss_cat_parameters.Rd’, ‘gauss_cat_sampler_most_likely.Rd’, ‘gauss_cat_sampler_random.Rd’, ‘gaussian_transform.Rd’, ‘gaussian_transform_separate.Rd’, ‘get_S_causal_steps.Rd’, ‘get_cov_mat.Rd’, ‘get_data_forecast.Rd’, ‘get_data_specs.Rd’, ‘get_extra_comp_args_default.Rd’, ‘get_extra_parameters.Rd’, ‘get_feature_specs.Rd’, ‘get_iterative_args_default.Rd’, ‘get_max_n_coalitions_causal.Rd’, ‘get_model_specs.Rd’, ‘get_mu_vec.Rd’, ‘get_nice_time.Rd’, ‘get_output_args_default.Rd’, ‘get_predict_model.Rd’, ‘get_results.Rd’, ‘get_supported_approaches.Rd’, ‘get_supported_models.Rd’, ‘get_valid_causal_coalitions.Rd’, ‘group_forecast_setup.Rd’, ‘hat_matrix_cpp.Rd’, ‘inv_gaussian_transform_cpp.Rd’, ‘lag_data.Rd’, ‘mahalanobis_distance_cpp.Rd’, ‘mcar_mask_generator.Rd’, ‘memory_layer.Rd’, ‘model_checker.Rd’, ‘num_str.Rd’, ‘observation_impute.Rd’, ‘observation_impute_cpp.Rd’, ‘paired_sampler.Rd’, ‘plot.shapr.Rd’, ‘plot_MSEv_eval_crit.Rd’, ‘plot_SV_several_approaches.Rd’, ‘plot_vaeac_eval_crit.Rd’, ‘plot_vaeac_imputed_ggpairs.Rd’, ‘predict_model.Rd’, ‘prepare_data.Rd’, ‘prepare_data_causal.Rd’, ‘prepare_data_copula_cpp.Rd’, ‘prepare_data_copula_cpp_caus.Rd’, ‘prepare_data_gaussian_cpp.Rd’, ‘prepare_data_gaussian_cpp_caus.Rd’, ‘prepare_data_single_coalition.Rd’, ‘prepare_next_iteration.Rd’, ‘print.shapr.Rd’, ‘print_iter.Rd’, ‘process_factor_data.Rd’, ‘quantile_type7_cpp.Rd’, ‘reg_forecast_setup.Rd’, ‘regression.check_namespaces.Rd’, ‘regression.check_parameters.Rd’, ‘regression.check_recipe_func.Rd’, ‘regression.check_sur_n_comb.Rd’, ‘regression.check_vfold_cv_para.Rd’, ‘regression.cv_message.Rd’, ‘regression.get_string_to_R.Rd’, ‘round_manual.Rd’, ‘rss_cpp.Rd’, ‘sample_coalition_table.Rd’, ‘sample_coalitions_cpp_str_paired.Rd’, ‘sample_combinations.Rd’, ‘sample_ctree.Rd’, ‘save_results.Rd’, ‘setup.Rd’, ‘setup_approach.Rd’, ‘shapley_setup.Rd’, ‘shapley_weights.Rd’, ‘shapr-package.Rd’, ‘skip_connection.Rd’, ‘specified_masks_mask_generator.Rd’, ‘specified_prob_mask_generator.Rd’, ‘summary.shapr.Rd’, ‘test_predict_model.Rd’, ‘testing_cleanup.Rd’, ‘vaeac.Rd’, ‘vaeac_categorical_parse_params.Rd’, ‘vaeac_check_activation_func.Rd’, ‘vaeac_check_cuda.Rd’, ‘vaeac_check_epoch_values.Rd’, ‘vaeac_check_extra_named_list.Rd’, ‘vaeac_check_logicals.Rd’, ‘vaeac_check_mask_gen.Rd’, ‘vaeac_check_masking_ratio.Rd’, ‘vaeac_check_parameters.Rd’, ‘vaeac_check_positive_integers.Rd’, ‘vaeac_check_positive_numerics.Rd’, ‘vaeac_check_probabilities.Rd’, ‘vaeac_check_save_names.Rd’, ‘vaeac_check_save_parameters.Rd’, ‘vaeac_check_which_vaeac_model.Rd’, ‘vaeac_check_x_colnames.Rd’, ‘vaeac_compute_normalization.Rd’, ‘vaeac_dataset.Rd’, ‘vaeac_extend_batch.Rd’, ‘vaeac_get_current_save_state.Rd’, ‘vaeac_get_data_objects.Rd’, ‘vaeac_get_evaluation_criteria.Rd’, ‘vaeac_get_extra_para_default.Rd’, ‘vaeac_get_full_state_list.Rd’, ‘vaeac_get_mask_generator_name.Rd’, ‘vaeac_get_model_from_checkp.Rd’, ‘vaeac_get_n_decimals.Rd’, ‘vaeac_get_optimizer.Rd’, ‘vaeac_get_save_file_names.Rd’, ‘vaeac_get_val_iwae.Rd’, ‘vaeac_get_x_explain_extended.Rd’, ‘vaeac_impute_missing_entries.Rd’, ‘vaeac_kl_normal_normal.Rd’, ‘vaeac_normal_parse_params.Rd’, ‘vaeac_normalize_data.Rd’, ‘vaeac_postprocess_data.Rd’, ‘vaeac_preprocess_data.Rd’, ‘vaeac_print_train_summary.Rd’, ‘vaeac_save_state.Rd’, ‘vaeac_train_model.Rd’, ‘vaeac_train_model_auxiliary.Rd’, ‘vaeac_train_model_continue.Rd’, ‘vaeac_update_para_locations.Rd’, ‘vaeac_update_pretrained_model.Rd’, ‘weight_matrix.Rd’, ‘weight_matrix_cpp.Rd’
checking Rd metadata ... OK
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DONE Status: 1 WARNING
using check arguments '--no-clean-on-error '