• using R version 4.5.0 (2025-04-11)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘scStability/DESCRIPTION’ ... OK
• this is package ‘scStability’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘scRNAseq’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘scStability’ can be installed ... [4s/4s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... NONE
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/13s] ERROR   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [4s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(scStability)   >   > test_check("scStability")   [ FAIL 3 | WARN 1 | SKIP 0 | PASS 2 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-clustStable.R:2:3'): Clusters were made correctly ──────────────   <packageNotFoundError/error/condition>   Error in `loadNamespace(x)`: there is no package called 'scRNAseq'   Backtrace:       ▆    1. └─base::loadNamespace(x) at test-clustStable.R:2:3    2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    3. └─base (local) withOneRestart(expr, restarts[[1L]])    4. └─base (local) doWithOneRestart(return(expr), restart)   ── Error ('test-compareEmb.R:2:3'): All embeddings are compared pairwise ───────   <packageNotFoundError/error/condition>   Error in `loadNamespace(x)`: there is no package called 'scRNAseq'   Backtrace:       ▆    1. └─base::loadNamespace(x) at test-compareEmb.R:2:3    2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    3. └─base (local) withOneRestart(expr, restarts[[1L]])    4. └─base (local) doWithOneRestart(return(expr), restart)   ── Error ('test-scStability.R:2:3'): Check final embeddings and clusters ───────   <packageNotFoundError/error/condition>   Error in `loadNamespace(x)`: there is no package called 'scRNAseq'   Backtrace:       ▆    1. └─base::loadNamespace(x) at test-scStability.R:2:3    2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)    3. └─base (local) withOneRestart(expr, restarts[[1L]])    4. └─base (local) doWithOneRestart(return(expr), restart)      [ FAIL 3 | WARN 1 | SKIP 0 | PASS 2 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/13s] OK
• checking PDF version of manual ... [6s/7s] OK
• DONE Status: 1 ERROR
• using check arguments '--no-clean-on-error '