• using R Under development (unstable) (2025-01-24 r87627)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘pould/DESCRIPTION’ ... OK
• this is package ‘pould’ version ‘1.0.1’
• package encoding: UTF-8
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• checking whether package ‘pould’ can be installed ... [9s/10s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
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• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
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• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
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• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^
• checking Rd metadata ... OK
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• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [9s/12s] OK
• checking PDF version of manual ... [6s/8s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '