• using R Under development (unstable) (2025-01-24 r87627)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘pould/DESCRIPTION’ ... OK
  • this is package ‘pould’ version ‘1.0.1’
  • package encoding: UTF-8
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  • checking whether package ‘pould’ can be installed ... [9s/10s] OK See the install log for details.
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  • checking R code for possible problems ... [6s/8s] OK
  • checking Rd files ... [0s/0s] NOTE checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?      5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?     27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?     24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^ checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?     33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated        | ^
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  • checking examples ... [4s/6s] OK
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  • checking PDF version of manual ... [6s/8s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '