* installing *source* package ‘pcaL1’ ...
** this is package ‘pcaL1’ version ‘1.5.9’
** package ‘pcaL1’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch x86_64 -E
./configure: line 2996: -n: command not found
checking for pkg-config... /opt/R/x86_64/bin/pkg-config
configure: set compile and link flags according to pkg-config
configure: compile flags are -I/opt/R/x86_64/include/coin
configure: link flags are -L/opt/R/x86_64/lib -lClpSolver -lClp -lc++ -lCoinUtils -lbz2 -lz -framework Accelerate -lm
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for Clp_C_Interface.h... yes
checking for library containing Clp_newModel... none required
checking for library containing Clp_setRowName... none required
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pca.c -o l1pca.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pca_R.c -o l1pca_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pcahp.c -o l1pcahp.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pcahp_R.c -o l1pcahp_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pcastar.c -o l1pcastar.o
l1pcastar.c:20:7: warning: variable 'numprojdim' set but not used [-Wunused-but-set-variable]
int numprojdim = probleminfo->numprojdim;
^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1pcastar_R.c -o l1pcastar_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1projection.c -o l1projection.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1projection_R.c -o l1projection_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcal1.c -o pcal1.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcal1_R.c -o pcal1_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcalp.c -o pcalp.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcalp_R.c -o pcalp_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sharpel1pca.c -o sharpel1pca.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sharpel1pca_R.c -o sharpel1pca_R.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sharpel1rs.c -o sharpel1rs.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sharpel1rs_R.c -o sharpel1rs_R.o
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsel1pca.c -o sparsel1pca.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include/coin -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsel1pca_R.c -o sparsel1pca_R.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o pcaL1.so init.o l1pca.o l1pca_R.o l1pcahp.o l1pcahp_R.o l1pcastar.o l1pcastar_R.o l1projection.o l1projection_R.o pcal1.o pcal1_R.o pcalp.o pcalp_R.o sharpel1pca.o sharpel1pca_R.o sharpel1rs.o sharpel1rs_R.o sparsel1pca.o sparsel1pca_R.o -L/opt/R/x86_64/lib -lClpSolver -lClp -lc++ -lCoinUtils -lbz2 -lz -framework Accelerate -lm -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/pcaL1.Rcheck/00LOCK-pcaL1/00new/pcaL1/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcaL1)