- using R version 4.5.0 beta (2025-03-29 r88074)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘nlme/DESCRIPTION’ ... OK
- this is package ‘nlme’ version ‘3.1-168’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘nlme’ can be installed ... [19s/38s] OK
See the install log for details.
- used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s/26s] OK
- checking Rd files ... [2s/2s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking examples ... [27s/35s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [40s/63s] OK
Processing ‘extras.Rin’
Running ‘anova.gls.R’ [1s/1s]
Running ‘augPred_lab.R’ [11s/15s]
Running ‘augPredmissing.R’ [0s/0s]
Running ‘coef.R’ [0s/0s]
Comparing ‘coef.Rout’ to ‘coef.Rout.save’ ... OK
Running ‘contrMat.R’ [0s/1s]
Running ‘corMatrix.R’ [0s/1s]
Running ‘corStruct.R’ [0s/0s]
Running ‘data.frame.R’ [0s/0s]
Running ‘deparse.R’ [0s/1s]
Running ‘deviance.R’ [1s/1s]
Running ‘fitted.R’ [0s/0s]
Running ‘getData.R’ [0s/0s]
Running ‘getVarCov.R’ [1s/1s]
Running ‘gls.R’ [1s/1s]
Running ‘gnls-ch8.R’ [1s/1s]
Running ‘lmList.R’ [1s/1s]
Running ‘lme.R’ [2s/4s]
Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK
Running ‘missing.R’ [0s/1s]
Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ... OK
Running ‘nlme.R’ [1s/4s]
Running ‘nlme2.R’ [1s/2s]
Running ‘predict.lme.R’ [2s/4s]
Running ‘scoping.R’ [1s/1s]
Running ‘sigma-fixed-etc.R’ [11s/18s]
Running ‘updateLme.R’ [1s/1s]
Running ‘varConstProp.R’ [1s/1s]
Running ‘varFixed.R’ [1s/1s]
Running ‘varIdent.R’ [0s/0s]
- checking PDF version of manual ... [17s/25s] OK
- DONE
Status: OK
- using check arguments '--no-clean-on-error '