* installing *source* package ‘modelSelection’ ...
** this is package ‘modelSelection’ version ‘1.0.3’
** package ‘modelSelection’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c Polynomial.cpp -o Polynomial.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c PolynomialRootFinder.cpp -o PolynomialRootFinder.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c covariancemat.cpp -o covariancemat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c crossprodmat.cpp -o crossprodmat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c cstat.cpp -o cstat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c ggm.cpp -o ggm.o
In file included from ggm.cpp:1:
In file included from ./ggm.h:16:
In file included from ./modselIntegrals.h:8:
In file included from ./modelSel_regression.h:12:
In file included from ./glm.h:13:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c glm.cpp -o glm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c marginalLikelihood.cpp -o marginalLikelihood.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c mixtures.cpp -o mixtures.o
In file included from glm.cpp:1:
In file included from ./glm.h:12:
In file included from ./modelSel_regression.h:13:
In file included from ./survival.h:14:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
In file included from marginalLikelihood.cpp:13:
In file included from ./modelSel_regression.h:12:
In file included from ./glm.h:13:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c modelSel_regression.cpp -o modelSel_regression.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c modselFunction.cpp -o modselFunction.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c modselIntegrals.cpp -o modselIntegrals.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/x86_64/include -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c survival.cpp -o survival.o
In file included from modelSel_regression.cpp:13:
In file included from ./glm.h:12:
In file included from ./modelSel_regression.h:13:
In file included from ./survival.h:14:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
1 warning generated.
modelSel_regression.cpp:4257:65: warning: variable 'singlevarcount' set but not used [-Wunused-but-set-variable]
int i, j, i_var, j_var, varcount, groupcount, *groupsel, p_i, singlevarcount=0, npar= covariate_indexes->size();
^
modelSel_regression.cpp:6507:92: warning: variable 'y0Wsy0' set but not used [-Wunused-but-set-variable]
double sigma, alphat, alpha, w, w1, w2, ws1, ws2, wss1, wss2, *y0, *Wy0, *Wsy0, y0Wy0=0, y0Wsy0=0, y0Wssy0=0;
^
In file included from modselFunction.cpp:1:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
modelSel_regression.cpp:7928:44: warning: variable 'singlevarcount' set but not used [-Wunused-but-set-variable]
int i, *isgroup=lm->isgroup, varingroup, singlevarcount=0;
^
In file included from modselIntegrals.cpp:1:
In file included from ./modselIntegrals.h:8:
In file included from ./modelSel_regression.h:12:
In file included from ./glm.h:13:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
In file included from survival.cpp:1:
In file included from ./survival.h:13:
In file included from ./modelSel_regression.h:12:
In file included from ./glm.h:13:
./modselFunction.h:23:74: warning: struct 'lmObject' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
typedef void (*pt2hess)(double **H, double *th, int *sel, int *thlength, struct lmObject *, std::map<string, double*> *funargs);
^
./modselFunction.h:10:7: note: previous use is here
class lmObject; //forward declaration (see modelSel_regression.h for actual declaration)
^
survival.cpp:125:135: warning: variable 'sumD' set but not used [-Wunused-but-set-variable]
double rho= th[*thlength -1], exprho, *y= (*lm).y, *x= (*lm).x, *ytXuncens= (*lm).ytXuncens, *res, *pnormres, ytres, *sumy2obs, *D, sumD=0, sumy2D=0, xyD, r;
^
survival.cpp:365:135: warning: variable 'sumD' set but not used [-Wunused-but-set-variable]
double rho= th[*thlength -1], exprho, *y= (*lm).y, *x= (*lm).x, *ytXuncens= (*lm).ytXuncens, *res, *pnormres, ytres, *sumy2obs, *D, sumD=0, sumy2D=0, xyD, r;
^
1 warning generated.
3 warnings generated.
1 warning generated.
4 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o modelSelection.so Polynomial.o PolynomialRootFinder.o RcppExports.o covariancemat.o crossprodmat.o cstat.o ggm.o glm.o marginalLikelihood.o mixtures.o modelSel_regression.o modselFunction.o modselIntegrals.o survival.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/modelSelection.Rcheck/00LOCK-modelSelection/00new/modelSelection/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (modelSelection)