* installing *source* package ‘medfate’ ...
** this is package ‘medfate’ version ‘5.0.0’
** package ‘medfate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c aspwb.cpp -o aspwb.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c biophysicsutils.cpp -o biophysicsutils.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c biophysicsutils_c.cpp -o biophysicsutils_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c carbon.cpp -o carbon.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c carbon_c.cpp -o carbon_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c communication_structures.cpp -o communication_structures.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c control_c.cpp -o control_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c decomposition.cpp -o decomposition.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c decomposition_c.cpp -o decomposition_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c firebehaviour.cpp -o firebehaviour.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c firebehaviour_c.cpp -o firebehaviour_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fireseverity_c.cpp -o fireseverity_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c forestutils.cpp -o forestutils.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c forestutils_c.cpp -o forestutils_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelmoisture.cpp -o fuelmoisture.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelmoisture_c.cpp -o fuelmoisture_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelstructure.cpp -o fuelstructure.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelstructure_c.cpp -o fuelstructure_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c growth.cpp -o growth.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c growth_day.cpp -o growth_day.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c growth_day_c.cpp -o growth_day_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydraulics.cpp -o hydraulics.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydraulics_c.cpp -o hydraulics_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydrology.cpp -o hydrology.o
hydraulics_c.cpp:119:14: warning: variable 'gmin' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
} else if (leafTemperature > TPhase) {
^~~~~~~~~~~~~~~~~~~~~~~~
hydraulics_c.cpp:122:10: note: uninitialized use occurs here
return(gmin);
^~~~
hydraulics_c.cpp:119:10: note: remove the 'if' if its condition is always true
} else if (leafTemperature > TPhase) {
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hydraulics_c.cpp:116:14: note: initialize the variable 'gmin' to silence this warning
double gmin;
^
= 0.0
1 warning generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydrology_c.cpp -o hydrology_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c incbeta_c.cpp -o incbeta_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c incgamma_c.cpp -o incgamma_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sperry.cpp -o inner_sperry.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sperry_c.cpp -o inner_sperry_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sureau.cpp -o inner_sureau.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sureau_c.cpp -o inner_sureau_c.o
inner_sperry.cpp:13:14: warning: unused variable 'eps_xylem' [-Wunused-const-variable]
const double eps_xylem = 1e3; // xylem elastic modulus (1 GPa = 1000 MPa)
^
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_advanced.cpp -o lightextinction_advanced.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_advanced_c.cpp -o lightextinction_advanced_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_basic.cpp -o lightextinction_basic.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_basic_c.cpp -o lightextinction_basic_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lowlevel_structures_c.cpp -o lowlevel_structures_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c medfate_runners.cpp -o medfate_runners.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c medfate_workers.cpp -o medfate_workers.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modelInput.cpp -o modelInput.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modelInput_c.cpp -o modelInput_c.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c numerical_solving.cpp -o numerical_solving.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c numerical_solving_c.cpp -o numerical_solving_c.o
numerical_solving_c.cpp:29:26: error: no member named 'erf' in namespace 'std'
return 0.5 * (1 + std::erf((x - mean) / (stddev * std::sqrt(2.0))));
~~~~~^
numerical_solving_c.cpp:29:58: error: no member named 'sqrt' in namespace 'std'
return 0.5 * (1 + std::erf((x - mean) / (stddev * std::sqrt(2.0))));
~~~~~^
2 errors generated.
make: *** [numerical_solving_c.o] Error 1
make: *** Waiting for unfinished jobs....
ERROR: compilation failed for package ‘medfate’
* removing ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.6/medfate.Rcheck/medfate’