• using R version 4.3.0 beta (2023-04-08 r84203)
  • using platform: x86_64-apple-darwin20 (64-bit)
  • R was compiled by
        Apple clang version 14.0.3 (clang-1403.0.22.14.1)
        GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3
  • using session charset: UTF-8
  • checking for file ‘mboost/DESCRIPTION’ ... OK
  • this is package ‘mboost’ version ‘2.9-7’
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Package suggested but not available for checking: ‘kangar00’
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘mboost’ can be installed ... [11s/14s] OK
  • used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
  • used SDK: ‘MacOSX11.3.sdk’
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/2s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
  • checking whether the package can be unloaded cleanly ... [1s/2s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
  • checking loading without being on the library search path ... [1s/2s] OK
  • checking startup messages can be suppressed ... [1s/2s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [11s/15s] OK
  • checking Rd files ... [1s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... NOTE
    Package unavailable to check Rd xrefs: ‘kangar00’
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in shell scripts ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking compilation flags in Makevars ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking use of PKG_*FLAGS in Makefiles ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [21s/29s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [39s/53s] OK
      ‘SurvivalEnsembles.Rnw’... [13s/17s] OK
      ‘mboost.Rnw’... [8s/11s] OK
      ‘mboost_illustrations.Rnw’... [9s/14s] OK
      ‘mboost_tutorial.Rnw’ using ‘UTF-8’... [8s/9s] OK
  • checking re-building of vignette outputs ... [52s/67s] NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘SurvivalEnsembles.Rnw’ using Sweave
    Loading required package: parallel
    Loading required package: stabs
    Loading required package: TH.data
    Loading required package: survival
    Loading required package: MASS

    Attaching package: ‘TH.data’

    The following object is masked from ‘package:MASS’:

        geyser

    Loading required package: rpart
    Loading required package: partykit
    Loading required package: grid
    Loading required package: libcoin
    Loading required package: mvtnorm

    Attaching package: ‘partykit’

    The following object is masked from ‘package:mboost’:

        varimp

    Error: processing vignette 'SurvivalEnsembles.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'SurvivalEnsembles.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `relsize.sty' not found.

    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)

    ! Emergency stop.
    <read *>
             
    l.31 ^^M
            
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘SurvivalEnsembles.Rnw’

    --- re-building ‘mboost.Rnw’ using Sweave
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    Loading required package: partykit
    Loading required package: grid
    Loading required package: libcoin
    Loading required package: mvtnorm

    Attaching package: ‘partykit’

    The following object is masked from ‘package:mboost’:

        varimp

    --- finished re-building ‘mboost.Rnw’

    --- re-building ‘mboost_illustrations.Rnw’ using Sweave
    Loading required package: parallel
    Loading required package: stabs
    Warning in gamboost(DEXfat ~ ., data = bodyfat, baselearner = "bss") :
      bss and bns are deprecated, bbs is used instead
    Warning in glmboost.matrix(x, yfit, family = L2fm, center = TRUE, control = boost_control(mstop = 200)) :
      model with centered covariates does not contain intercept
    Warning in hatvalues.gamboost(model) :
      AIC might not be reasonable for family user-specified

    NOTE: Coefficients from a Binomial model are half the size of coefficients
     from a model fitted via glm(... , family = 'binomial').
    See Warning section in ?coef.mboost


    NOTE: Coefficients from a Binomial model are half the size of coefficients
     from a model fitted via glm(... , family = 'binomial').
    See Warning section in ?coef.mboost

    Warning in gamboost(status ~ ., data = wpbc2, family = Binomial(), baselearner = "bss") :
      bss and bns are deprecated, bbs is used instead
    Error: processing vignette 'mboost_illustrations.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'mboost_illustrations.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `relsize.sty' not found.

    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)

    ! Emergency stop.
    <read *>
             
    l.32 ^^M
            
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘mboost_illustrations.Rnw’

    --- re-building ‘mboost_tutorial.Rnw’ using Sweave
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Warning in bsplines(mf[[i]], knots = args$knots[[i]]$knots, boundary.knots = args$knots[[i]]$boundary.knots, :
      Some ‘x’ values are beyond ‘boundary.knots’; Linear extrapolation used.
    Error: processing vignette 'mboost_tutorial.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'mboost_tutorial.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `dsfont.sty' not found.

    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)

    ! Emergency stop.
    <read *>
             
    l.16 \usepackage
                    {subfigure}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘mboost_tutorial.Rnw’

    SUMMARY: processing the following files failed:
      ‘SurvivalEnsembles.Rnw’ ‘mboost_illustrations.Rnw’
      ‘mboost_tutorial.Rnw’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... [5s/7s] OK
  • DONE
    Status: 3 NOTEs
  • using check arguments '--no-clean-on-error '