* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.5/mapi.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.3.1 * using session charset: UTF-8 * checking for file ‘mapi/DESCRIPTION’ ... OK * this is package ‘mapi’ version ‘1.1.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mapi’ can be installed ... [10s/10s] OK See 'https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/mapi-00install.html' for details. * used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [80s/125s] ERROR Running ‘testthat.R’ [80s/125s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.566, system: 0.055, elapsed: 2.388 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.057, system: 0.106, elapsed: 10.905 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.188, system: 0.013, elapsed: 0.232 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.766, system: 0.195, elapsed: 5.277 seconds] Computing values for grid cells... ... done. [user: 0.166, system: 0.003, elapsed: 0.225 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.269, system: 0.393, elapsed: 19.664 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.494, system: 0.038, elapsed: 2.169 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.126, system: 0.085, elapsed: 12.872 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.315 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.756, system: 0.173, elapsed: 6.220 seconds] Computing values for grid cells... ... done. [user: 0.165, system: 0.004, elapsed: 0.271 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.272, system: 0.333, elapsed: 22.717 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.548, system: 0.038, elapsed: 2.811 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.243, system: 0.089, elapsed: 15.823 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.181, system: 0.014, elapsed: 0.487 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.743, system: 0.184, elapsed: 9.909 seconds] Computing values for grid cells... ... done. [user: 0.161, system: 0.003, elapsed: 0.357 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 4 3 ... computing probabilities from permuted values ... ... done. [user: 1.159, system: 0.226, elapsed: 1.968 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.659, system: 0.579, elapsed: 32.709 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.466, system: 0.034, elapsed: 4.050 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.137, system: 0.054, elapsed: 16.669 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.301 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.695, system: 0.175, elapsed: 5.484 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.003, elapsed: 0.235 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.170, system: 0.463, elapsed: 14.982 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 25.470, system: 0.771, elapsed: 43.137 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted * checking PDF version of manual ... [11s/15s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 2:54