* installing *source* package ‘lolog’ ...
** this is package ‘lolog’ version ‘1.3.2’
** package ‘lolog’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppModule.cpp -o RcppModule.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StatController.cpp -o StatController.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_BinaryNet.cpp -o test_BinaryNet.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_Constraints.cpp -o test_Constraints.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_LatentOrderLikelhood.cpp -o test_LatentOrderLikelhood.o
In file included from test_Constraints.cpp:7:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^In file included from StatController.cpp:3:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
In file included from test_LatentOrderLikelhood.cpp:5:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
test_LatentOrderLikelhood.cpp:108:12: warning: unused variable 'llik' [-Wunused-variable]
double llik = model.logLik();
^
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_ParamParser.cpp -o test_ParamParser.o
../inst/include/Stats.h:2472:26: warning: unused variable 'fit' [-Wunused-variable]
NeighborIterator fit = net.begin(order[actorIndex]);
^
../inst/include/Stat.h:247:14: note: in instantiation of member function 'lolog::SharedNbrs<lolog::Undirected>::dyadUpdate' requested here
stat.dyadUpdate(net,from,to,order,actorIndex);
^
../inst/include/Stat.h:243:9: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::dyadUpdate' requested here
dyadUpdate(net,from,to,order,actorIndex);
^
../inst/include/Stat.h:169:5: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::vDyadUpdate' requested here
Stat() : stat(){}
^
StatController.cpp:87:42: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::Stat' requested here
registerStatistic( UndirStatPtr( new UndirectedSharedNbrs() ) );
^
In file included from StatController.cpp:3:
../inst/include/Stats.h:2473:26: warning: unused variable 'fend' [-Wunused-variable]
NeighborIterator fend = net.end(order[actorIndex]);
^
In file included from RcppModule.cpp:6:
In file included from ../inst/include/LatentOrderLikelihood.h:4:
In file included from ../inst/include/Model.h:6:
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = statMapPtr->at(name);
^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getStat' requested here
AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
^
RcppModule.cpp:81:48: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addStatistic' requested here
.method("addStatistic",&Model<Undirected>::addStatistic)
^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
static StatMapPtr statMapPtr;
^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::statMapPtr' is explicitly instantiated in another translation unit
pS = statMapPtr->at(name);
^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = offsetMapPtr->at(name);
^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getOffset' requested here
AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
^
RcppModule.cpp:82:45: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addOffset' requested here
.method("addOffset",&Model<Undirected>::addOffset)
^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
static OffsetMapPtr offsetMapPtr;
^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::offsetMapPtr' is explicitly instantiated in another translation unit
pS = offsetMapPtr->at(name);
^
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = statMapPtr->at(name);
^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getStat' requested here
AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
^
RcppModule.cpp:98:46: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addStatistic' requested here
.method("addStatistic",&Model<Directed>::addStatistic)
^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
static StatMapPtr statMapPtr;
^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::statMapPtr' is explicitly instantiated in another translation unit
pS = statMapPtr->at(name);
^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = offsetMapPtr->at(name);
^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getOffset' requested here
AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
^
RcppModule.cpp:99:43: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addOffset' requested here
.method("addOffset",&Model<Directed>::addOffset)
^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
static OffsetMapPtr offsetMapPtr;
^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::offsetMapPtr' is explicitly instantiated in another translation unit
pS = offsetMapPtr->at(name);
^
test_ParamParser.cpp:10:5: warning: unused label 'Rcpp' [-Wunused-label]
Rcpp:List params = Rcpp::List::create(1, Rcpp::Named("a")=2, Rcpp::Named("b") = "ss");
^~~~~
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_Stats.cpp -o test_Stats.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests.cpp -o tests.o
8 warnings generated.
In file included from test_Stats.cpp:4:
../inst/include/Stats.h:1187:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1188:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:1199:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:2464:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2465:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2471:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2805:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2990:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
9 warnings generated.
10 warnings generated.
8 warnings generated.
4 warnings generated.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
clang++ -arch x86_64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o lolog.so RcppExports.o RcppModule.o StatController.o main.o test_BinaryNet.o test_Constraints.o test_LatentOrderLikelhood.o test_ParamParser.o test_Stats.o tests.o -F/Library/Frameworks/R.framework/.. -framework R
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'.
/Volumes/Builds/packages/big-sur-x86_64/results/4.6/lolog.Rcheck/00_pkg_src/lolog/src/main.o: no symbols
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/lolog.Rcheck/00LOCK-lolog/00new/lolog/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘[’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lolog)