* installing *source* package ‘koopman.dmd’ ...
** this is package ‘koopman.dmd’ version ‘0.2.2’
** package ‘koopman.dmd’ successfully unpacked and MD5 sums checked
** using staged installation
** using rustc 1.93.0 (254b59607 2026-01-19)
** using cargo 1.93.0 (083ac5135 2025-12-15)
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
# CRAN build machines have no network access, so the whole dependency tree ships
# in vendor.tar.xz and cargo is pointed at it and run with --offline. See
# https://cran.r-project.org/web/packages/using_rust.html
#
# The source-replacement config goes in CARGO_HOME, NOT beside the manifest:
# cargo looks for .cargo/config.toml relative to its working directory, which is
# src/ here, so a config at src/rust/.cargo/config.toml is never read. The
# vendor directory is given as an absolute path for the same reason.
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo
export PATH="/opt/R/x86_64/bin:/opt/gfortran/bin:/Applications/CMake.app/CMake.app/Contents/bin:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo && \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf ./rust/vendor.tar.xz -C ./rust && \
printf '[source.crates-io]\nreplace-with = "vendored-sources"\n\n[source.vendored-sources]\ndirectory = "/Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor"\n' > /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo/config.toml && \
cargo build --lib --release --offline --locked -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
else \
cargo build --lib --release -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
fi
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.107
Compiling unicode-ident v1.0.24
Compiling quote v1.0.47
Compiling libc v0.2.189
Compiling zerocopy v0.8.55
Compiling libm v0.2.16
Compiling autocfg v1.5.1
Compiling num-traits v0.2.19
Compiling cfg-if v1.0.4
Compiling crossbeam-utils v0.8.22
Compiling syn v2.0.119
Compiling bytemuck v1.25.2
Compiling crossbeam-epoch v0.9.20
Compiling getrandom v0.2.17
Compiling rand_core v0.6.4
Compiling nano-gemm-codegen v0.1.0
Compiling crossbeam-deque v0.8.7
Compiling rayon-core v1.13.0
Compiling version_check v0.9.5
Compiling thiserror v1.0.69
Compiling pulp v0.21.5
Compiling either v1.17.0
Compiling byteorder v1.5.0
Compiling bitflags v2.13.1
Compiling reborrow v0.5.5
Compiling paste v1.0.15
Compiling heck v0.5.0
Compiling rayon v1.12.0
Compiling dyn-stack-macros v0.1.3
Compiling dyn-stack v0.13.2
Compiling raw-cpuid v11.6.0
Compiling once_cell v1.21.4
Compiling syn v1.0.109
Compiling seq-macro v0.3.6
Compiling ucd-trie v0.1.7
Compiling memchr v2.8.3
Compiling nano-gemm-core v0.1.0
Compiling pest v2.8.8
Compiling ppv-lite86 v0.2.21
Compiling thiserror-impl v1.0.69
Compiling rand_chacha v0.3.1
Compiling enum-as-inner v0.6.1
Compiling rand v0.8.7
Compiling pest_meta v2.8.8
Compiling equator-macro v0.4.2
Compiling sysctl v0.6.0
Compiling num-integer v0.1.46
Compiling num-complex v0.4.6
Compiling pest_generator v2.8.8
Compiling nano-gemm-c64 v0.1.0
Compiling nano-gemm-c32 v0.1.0
Compiling nano-gemm-f32 v0.1.0
Compiling nano-gemm-f64 v0.1.0
Compiling crossbeam-queue v0.3.13
Compiling crossbeam-channel v0.5.16
Compiling syn v3.0.3
Compiling defer v0.2.1
Compiling interpol v0.2.1
Compiling pest_derive v2.8.8
Compiling crossbeam v0.8.4
Compiling private-gemm-x86 v0.1.20
Compiling num-bigint v0.4.8
Compiling equator v0.4.2
Compiling equator-macro v0.2.1
Compiling extendr-ffi v0.9.0
Compiling atomic-wait v1.1.0
Compiling spindle v0.2.6
Compiling equator v0.2.2
Compiling gemm-common v0.18.2
Compiling qd v0.7.7
Compiling py_literal v0.4.0
Compiling gemm-f32 v0.18.2
Compiling gemm-f64 v0.18.2
Compiling gemm-c32 v0.18.2
Compiling gemm-c64 v0.18.2
Compiling faer-macros v0.21.0
Compiling num_cpus v1.17.0
Compiling generativity v1.2.1
Compiling thiserror v2.0.19
Compiling faer-traits v0.22.1
Compiling gemm v0.18.2
Compiling npyz v0.8.4
Compiling thiserror-impl v2.0.19
Compiling rand_distr v0.4.3
Compiling lazy_static v1.5.0
Compiling extendr-api v0.9.0
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.14
Compiling nano-gemm v0.1.3
Compiling faer v0.22.6
Compiling koopman-dmd v0.2.0
Compiling koopman-dmd-r v0.2.0 (/Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust)
Finished `release` profile [optimized] target(s) in 5m 17s
# Reclaim space unless a developer asked to keep it (NOT_CRAN=true).
if [ "" != "true" ]; then \
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor && \
rm -Rf ./rust/target/release/build; \
fi
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o koopman.dmd.so entrypoint.o -L./rust/target/release -lkoopman_dmd_r -lresolv -F/Library/Frameworks/R.framework/.. -framework R
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor ./rust/target/release/libkoopman_dmd_r.a
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00LOCK-koopman.dmd/00new/koopman.dmd/libs
** generating debug symbols (dSYM)
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std-80c57efd13e5c60f.std.6723c73a6a2c3812-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(panic_unwind-609eec6b68420c23.panic_unwind.8a11b8e3a536324e-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(memchr-7633c0af176ce18f.memchr.62151324e58f9a71-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std_detect-3d2b83b4ef271faf.std_detect.f484fbc3183826d-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(hashbrown-d63660a4bacc6e0d.hashbrown.d999ac00aa297d90-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(alloc-2ae10ae5c48735a7.alloc.cd66f8b944d0d1ee-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(core-ebd38e986244aca3.core.35ed32324c362c64-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.087.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.090.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.127.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.6/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.193.rcgu.o) unable to open object file: No such file or directory
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (koopman.dmd)