* installing *source* package ‘jackalope’ ...
** package ‘jackalope’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c alter_reference.cpp -o alter_reference.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c create_sequences.cpp -o create_sequences.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hap_classes.cpp -o hap_classes.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c haps_ssites.cpp -o haps_ssites.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hts_illumina.cpp -o hts_illumina.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hts_pacbio.cpp -o hts_pacbio.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io_fasta.cpp -o io_fasta.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io_ms.cpp -o io_ms.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c io_vcf.cpp -o io_vcf.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c mutator.cpp -o mutator.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c mutator_indels.cpp -o mutator_indels.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c mutator_subs.cpp -o mutator_subs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c phylogenomics.cpp -o phylogenomics.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ref_hap_access.cpp -o ref_hap_access.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sub_models.cpp -o sub_models.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/include' -I'/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c util.cpp -o util.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o jackalope.so RcppExports.o alter_reference.o create_sequences.o hap_classes.o haps_ssites.o hts_illumina.o hts_pacbio.o io_fasta.o io_ms.o io_vcf.o mutator.o mutator_indels.o mutator_subs.o phylogenomics.o ref_hap_access.o sub_models.o util.o -lz -llzma -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath /Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(kfunc.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(kstring.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(bcf_sr_sort.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(bgzf.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(errmod.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(faidx.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(header.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(hfile.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(hts.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(hts_expr.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(hts_os.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(md5.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(multipart.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(probaln.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(realn.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(regidx.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(region.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(sam.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(sam_mods.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(synced_bcf_reader.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(vcf_sweep.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(tbx.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(textutils.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(thread_pool.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(vcf.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(vcfutils.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_codecs.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_decode.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_encode.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_external.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_index.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_io.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(cram_stats.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(mFILE.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(open_trace_file.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(pooled_alloc.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(string_alloc.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(arith_dynamic.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(fqzcomp_qual.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(htscodecs.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(pack.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static4x16pr.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static32x16pr_avx2.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static32x16pr_avx512.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static32x16pr_sse4.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static32x16pr_neon.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static32x16pr.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rANS_static.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(rle.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(tokenise_name3.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(utils.o)) was built for newer macOS version (13.0) than being linked (11.0)
ld: warning: object file (/Volumes/Builds/packages/big-sur-x86_64/extralib/4.4/Rhtslib/usrlib/libhts.a(hfile_libcurl.o)) was built for newer macOS version (13.0) than being linked (11.0)
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/jackalope.Rcheck/00LOCK-jackalope/00new/jackalope/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jackalope)