Install log for 'imuGAP'

* installing *source* package ‘imuGAP’ ...
** this is package ‘imuGAP’ version ‘0.2.0’
** package ‘imuGAP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’


clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include' -I/opt/R/x86_64/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o


In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include' -I/opt/R/x86_64/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fPIC  -falign-functions=64 -Wall -g -O2   -c stanExports_impute_school_coverage_process_v6.cc -o stanExports_impute_school_coverage_process_v6.o


In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:21:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
      virtual std::streamsize xsputn(const char_type* s, int n) {
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int')
    virtual streamsize xsputn(const char_type* __s, streamsize __n);
                       ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:21:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
      virtual std::streamsize xsputn(const char_type* s, int n) {
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int')
    virtual streamsize xsputn(const char_type* __s, streamsize __n);
                       ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:43:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
  static constexpr const char* function = "student_t_qf";
                               ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include' -I/opt/R/x86_64/include   -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW   -fPIC  -falign-functions=64 -Wall -g -O2   -c stanExports_impute_school_coverage_process_v6_single_layer.cc -o stanExports_impute_school_coverage_process_v6_single_layer.o
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:49:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
      const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
                   ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
    const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
                 ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:54:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
  int ret = 0;
      ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
    int ret = stan::services::error_codes::CONFIG;
        ^
In file included from stanExports_impute_school_coverage_process_v6.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6.h:11:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  const Eigen::Index rows = row_idx.ns_.size();
                     ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  const Eigen::Index cols = col_idx.ns_.size();
                     ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:21:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
      virtual std::streamsize xsputn(const char_type* s, int n) {
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int')
    virtual streamsize xsputn(const char_type* __s, streamsize __n);
                       ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:21:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
      virtual std::streamsize xsputn(const char_type* s, int n) {
                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int')
    virtual streamsize xsputn(const char_type* __s, streamsize __n);
                       ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:43:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
  static constexpr const char* function = "student_t_qf";
                               ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:49:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
      const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
                   ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
    const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
                 ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:54:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
  int ret = 0;
      ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/rstaninc.hpp:4:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
    int ret = stan::services::error_codes::CONFIG;
        ^
In file included from stanExports_impute_school_coverage_process_v6_single_layer.cc:5:
In file included from ./stanExports_impute_school_coverage_process_v6_single_layer.h:11:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/model_header.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing.hpp:13:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable]
  const Eigen::Index rows = row_idx.ns_.size();
                     ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable]
  const Eigen::Index cols = col_idx.ns_.size();
                     ^
14 warnings generated.
14 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o imuGAP.so RcppExports.o stanExports_impute_school_coverage_process_v6.o stanExports_impute_school_coverage_process_v6_single_layer.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/lib -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/imuGAP.Rcheck/00LOCK-imuGAP/00new/imuGAP/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (imuGAP)