• using R version 4.5.1 (2025-06-13)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘gaawr2/DESCRIPTION’ ... OK
• this is package ‘gaawr2’ version ‘0.0.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gaawr2’ can be installed ... [6s/8s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] OK   Running ‘testthat.R’ [2s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [74s/110s] ERROR Error(s) in re-building vignettes: --- re-building ‘gaawr2.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' running: bash -c "export message=\"Hello, world!\" echo \"print('\$message')\" > hello.R R CMD BATCH hello.R R --no-save -q < hello.R R --no-save -q <<END message <- Sys.getenv(\"message\"); print(message) source(\"hello.R\") END echo \${message} | \\ Rscript -e ' message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE); write.table(message, col.names=FALSE, row.names=FALSE,             quote=FALSE) ' | \\ cat rm hello.*" Quitting from gaawr2.Rmd:409-415 [ensdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace:     ▆  1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75)  2. └─base::.handleSimpleError(...)  3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gaawr2.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘gaawr2.Rmd’ --- re-building ‘web.Rmd’ using rmarkdown [WARNING] Citeproc: citation tsv not found --- finished re-building ‘web.Rmd’ SUMMARY: processing the following file failed:   ‘gaawr2.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/7s] OK
• DONE Status: 1 ERROR
• using check arguments '--no-clean-on-error '