- using R version 4.5.0 beta (2025-03-29 r88074)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘ftrCOOL/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ftrCOOL’ version ‘2.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ftrCOOL’ can be installed ... [12s/20s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s/45s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) MMI_DNA.Rd:20: Lost braces; missing escapes or markup?
20 | MMI computes mutual information based on 2-mers T2 = { AA, AC, AG, AT, CC, CG, CT, GG, GT, TT}
| ^
checkRd: (-1) MMI_DNA.Rd:21: Lost braces; missing escapes or markup?
21 | and 3-mers T3 = {AAA, AAC, AAG, AAT, ACC, ACG, ACT, AGG, AGT, ATT, CCC, CCG, CCT, CGG, CGT, CTT, GGG, GGT, GTT and TTT}
| ^
checkRd: (-1) MMI_RNA.Rd:20: Lost braces; missing escapes or markup?
20 | MMI computes mutual information based on 2-mers T2 = { AA, AC, AG, AU, CC, CG, CU, GG, GU, U}
| ^
checkRd: (-1) MMI_RNA.Rd:21: Lost braces; missing escapes or markup?
21 | and 3-mers T3 = {AAA, AAC, AAG, AAU, ACC, ACG, ACU, AGG, AGU, AUU, CCC, CCG, CCU, CGG, CGU, CUU, GGG, GGU, GUU and UUU}
| ^
checkRd: (-1) binary_5bit_T1.Rd:40: Lost braces; missing escapes or markup?
40 | Then represent group of amino acids by a 5 dimentional vector i.e.{e1, e2, e3, e4, e5}.
| ^
checkRd: (-1) binary_5bit_T1.Rd:41: Lost braces; missing escapes or markup?
41 | e1={G, A, V, L, M, I}, e2={F, Y, W}, e3={K, R, H}, e4={D, E}, e5={S, T, C, P, N, Q}. e1 is ecoded by 10000
| ^
checkRd: (-1) binary_5bit_T1.Rd:41: Lost braces; missing escapes or markup?
41 | e1={G, A, V, L, M, I}, e2={F, Y, W}, e3={K, R, H}, e4={D, E}, e5={S, T, C, P, N, Q}. e1 is ecoded by 10000
| ^
checkRd: (-1) binary_5bit_T1.Rd:41: Lost braces; missing escapes or markup?
41 | e1={G, A, V, L, M, I}, e2={F, Y, W}, e3={K, R, H}, e4={D, E}, e5={S, T, C, P, N, Q}. e1 is ecoded by 10000
| ^
checkRd: (-1) binary_5bit_T1.Rd:41: Lost braces; missing escapes or markup?
41 | e1={G, A, V, L, M, I}, e2={F, Y, W}, e3={K, R, H}, e4={D, E}, e5={S, T, C, P, N, Q}. e1 is ecoded by 10000
| ^
checkRd: (-1) binary_5bit_T1.Rd:41: Lost braces; missing escapes or markup?
41 | e1={G, A, V, L, M, I}, e2={F, Y, W}, e3={K, R, H}, e4={D, E}, e5={S, T, C, P, N, Q}. e1 is ecoded by 10000
| ^
checkRd: (-1) binary_6bit.Rd:40: Lost braces; missing escapes or markup?
40 | Then represent group of amino acids by a 6 dimentional vector i.e.{e1, e2, e3, e4, e5, e6}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
checkRd: (-1) binary_6bit.Rd:41: Lost braces; missing escapes or markup?
41 | e1={H, R, K}, e2={D, E, N, D}, e3={C}, e4={S, T, P, A, G}, e5={M, I, L, V}, e6={F, Y, W}.
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [25s/37s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [1s/1s] OK
Running ‘testthat.R’ [0s/0s]
- checking PDF version of manual ... [10s/14s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '